Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 143 6e-29
seq13659 129 1e-24
seq6368 87.8 4e-12
>seq4612
Length=25615
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || ||||||||||| || |||| ||||||||||| || ||| | |||||||
Sbjct 15485 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 15426
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || ||||| || | ||| || ||||| ||| ||| |||||| ||
Sbjct 15425 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15366
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||| || | || || | | || || || ||||||||||||
Sbjct 15365 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15306
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || | || |||||||| |||||
Sbjct 15305 TTACCAGTCAACGTCTTCACAAAGATTTG 15277
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || ||||||||||| || |||| |||||| |||| || ||| | |||||||
Sbjct 15713 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCT 15654
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || ||||| || | ||| || ||||| ||| ||| |||||| ||
Sbjct 15653 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15594
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||| || | || || | | || || || ||||||||||||
Sbjct 15593 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15534
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || | || |||||||| |||||
Sbjct 15533 TTACCAGTCAACGTCTTCACAAAGATTTG 15505
Score = 123 bits (136), Expect = 6e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| ||||| || | || ||||| || |||| |||||| |||| || |||
Sbjct 15950 CGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTA 15891
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||| |||||| || ||||| || | ||| || ||||| ||| ||| |||
Sbjct 15890 CGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCT 15831
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || || ||||| ||||| || | || || | | || || || |||
Sbjct 15830 TCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAAC 15771
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||||||||||| || | || |||||||| |||||
Sbjct 15770 GTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTG 15733
Score = 91.5 bits (100), Expect = 3e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|| ||||| || |||||||||||||||||| | ||| || | ||||||||| ||||||||
Sbjct 15631 ATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACATCCAGAAA 15690
Query 200998 GAGTCTACTCTTCACCTTGT 201017
||||| ||||| || |||||
Sbjct 15691 GAGTCGACTCTGCATCTTGT 15710
Score = 86.0 bits (94), Expect = 1e-11
Identities = 67/80 (84%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|| ||||| || |||||||||||||||||| | ||| || | || |||||| ||||||||
Sbjct 15403 ATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAA 15462
Query 200998 GAGTCTACTCTTCACCTTGT 201017
||||| ||||| || |||||
Sbjct 15463 GAGTCGACTCTGCATCTTGT 15482
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997
|| ||||| || |||||||||||||||||| | ||| || | ||||||||| ||||||||
Sbjct 15859 ATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACATCCAGAAA 15918
Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
||||| || | || |||||| || | || ||
Sbjct 15919 GAGTCAACCTTACATCTTGTTCTGCGCCTACG 15950
>seq13659
Length=5019
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || ||||||||||| || || | ||||||||||| || ||| | |||||||
Sbjct 1114 AGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCT 1173
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||| |||||| || ||||| || | ||| || ||||| ||| ||| |||||| ||
Sbjct 1174 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 1233
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||| || | || || | | || || |||||||| ||||||
Sbjct 1234 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTC 1293
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | || || ||||| |||||
Sbjct 1294 TTTCCTGTCAATGTCTTTACAAAGATTTG 1322
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|| || | ||| ||||| || | || ||||| || |||| ||||||||||| || |||
Sbjct 877 CGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA 936
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||| |||||| || ||||| || | ||| || ||||| ||| ||| |||
Sbjct 937 CGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCT 996
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || || ||||| ||||| || | || || | | || || || |||
Sbjct 997 TCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAAC 1056
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||||||||||| || | || |||||||| |||||
Sbjct 1057 GTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTG 1094
>seq6368
Length=18664
Score = 87.8 bits (96), Expect = 4e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | |||||||| || || || || ||||| || | || ||||| | | |||
Sbjct 850 CGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTT 791
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||| || || || || || || ||||| || ||||| || || |||
Sbjct 790 CGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCT 731
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| || ||||| || ||| || | ||| | || || | | || || || |
Sbjct 730 TCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGG 671
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || ||||| || || ||||| ||||| ||
Sbjct 670 GTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTG 633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178568824289785
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |