Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4612 143 6e-29 seq13659 129 1e-24 seq6368 87.8 4e-12 >seq4612 Length=25615 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || |||| ||||||||||| || ||| | ||||||| Sbjct 15485 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 15426 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || ||||| || | ||| || ||||| ||| ||| |||||| || Sbjct 15425 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15366 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || || |||||||||||| Sbjct 15365 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15306 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || |||||||| ||||| Sbjct 15305 TTACCAGTCAACGTCTTCACAAAGATTTG 15277 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || |||| |||||| |||| || ||| | ||||||| Sbjct 15713 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCT 15654 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || ||||| || | ||| || ||||| ||| ||| |||||| || Sbjct 15653 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15594 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || || |||||||||||| Sbjct 15593 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15534 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || |||||||| ||||| Sbjct 15533 TTACCAGTCAACGTCTTCACAAAGATTTG 15505 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| ||||| || | || ||||| || |||| |||||| |||| || ||| Sbjct 15950 CGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTA 15891 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| |||||| || ||||| || | ||| || ||||| ||| ||| ||| Sbjct 15890 CGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCT 15831 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||||| || | || || | | || || || ||| Sbjct 15830 TCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAAC 15771 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| || | || |||||||| ||||| Sbjct 15770 GTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTG 15733 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || ||||| || |||||||||||||||||| | ||| || | ||||||||| |||||||| Sbjct 15631 ATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACATCCAGAAA 15690 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| || ||||| Sbjct 15691 GAGTCGACTCTGCATCTTGT 15710 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || ||||| || |||||||||||||||||| | ||| || | || |||||| |||||||| Sbjct 15403 ATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAA 15462 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| || ||||| Sbjct 15463 GAGTCGACTCTGCATCTTGT 15482 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || ||||| || |||||||||||||||||| | ||| || | ||||||||| |||||||| Sbjct 15859 ATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACATCCAGAAA 15918 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| || | || |||||| || | || || Sbjct 15919 GAGTCAACCTTACATCTTGTTCTGCGCCTACG 15950 >seq13659 Length=5019 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||||||||| || || | ||||||||||| || ||| | ||||||| Sbjct 1114 AGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCT 1173 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| || ||||| || | ||| || ||||| ||| ||| |||||| || Sbjct 1174 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 1233 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| || | || || | | || || |||||||| |||||| Sbjct 1234 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTC 1293 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| ||||| Sbjct 1294 TTTCCTGTCAATGTCTTTACAAAGATTTG 1322 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| ||||| || | || ||||| || |||| ||||||||||| || ||| Sbjct 877 CGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA 936 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||| |||||| || ||||| || | ||| || ||||| ||| ||| ||| Sbjct 937 CGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCT 996 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| ||||| || | || || | | || || || ||| Sbjct 997 TCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAAC 1056 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||||||||| || | || |||||||| ||||| Sbjct 1057 GTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTG 1094 >seq6368 Length=18664 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | |||||||| || || || || ||||| || | || ||||| | | ||| Sbjct 850 CGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTT 791 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 790 CGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCT 731 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || ||||| || ||| || | ||| | || || | | || || || | Sbjct 730 TCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGG 671 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| || || ||||| ||||| || Sbjct 670 GTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTG 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178568824289785