Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq5398 168 3e-36
seq6368 154 6e-32
seq2131 154 6e-32
seq4612 96.9 1e-14
seq13659 93.3 2e-13
seq3361 86.0 2e-11
>seq5398
Length=21971
Score = 168 bits (186), Expect = 3e-36
Identities = 263/373 (71%), Gaps = 10/373 (3%)
Strand=Plus/Minus
Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291
|| || ||||| || || || || || ||||||| | || |||||||| ||
Sbjct 6472 AAGACGTTTGCCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCT 6413
Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351
||| ||| ||||| || || |||||||| | ||||| || || ||||||||
Sbjct 6412 GAATCCTATCTTGGTAAAAAGGTAACCCATGCAGTAGTCACTGTCCCAGCCTATTTCAAC 6353
Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCG 451410
||||||||||| || ||||| |||||||| || ||| ||||||||||| ||| | ||||
Sbjct 6352 GATGCACAACGCCAGGCAACCAAAGATGCTGGCACA-ATTGCTGGTTTGAATATAATTCG 6294
Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470
|| ||||||||||| || || ||||| | || || || |||| | ||||||
Sbjct 6293 GATCATTAATGAACCAACTGCTGCTGCGATTGCTTACGGTCTAG-------ATAAGAAAG 6241
Query 451471 A-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTAC 451529
| | || || |||||| | |||||||| |||| || || ||| || ||| |||
Sbjct 6240 ATGGTGAGAAGAATATTCTGATATTTGATCTTGGAGGTGGTACTTTCGACGTTTCATTAC 6181
Query 451530 TTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAG 451589
|| ||||||| | || || || |||||| || || |||||||| || ||||| || |
Sbjct 6180 TTACAATTGAGAACGGTGTGTTCGAAGTAGTTGCTACAAATGGTGACACACATCTTGGTG 6121
Query 451590 GTGAAGATATTGA 451602
| || || ||||
Sbjct 6120 GAGAGGACTTTGA 6108
>seq6368
Length=18664
Score = 154 bits (170), Expect = 6e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || ||||| || || |||||||| || || || ||||| | ||
Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||||| |||| |||||||||||||| ||||| || || || || |||
Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||| ||||||| | || |||||||| ||||||||| ||||| | | || ||||||
Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 809
Query 391230 ATTGATAAGGATGCAACACTTCA 391252
|| | ||||| ||||||||||
Sbjct 810 ATACAGAAGGAATCAACACTTCA 832
>seq2131
Length=43850
Score = 154 bits (170), Expect = 6e-32
Identities = 825/1294 (64%), Gaps = 43/1294 (3%)
Strand=Plus/Plus
Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCT--GAAGAAATTTCATCTATGGTTCTTACTA 451274
||||| ||||| | |||| || | |||| || || ||||| || ||||| | || |
Sbjct 42074 TATAAGGGTGAGA--AAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTGACAA 42131
Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334
||||||| || || ||| ||| | || |||| | ||| || || || || |
Sbjct 42132 AAATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACAGTGAGTGACGCGGTTATAACAG 42191
Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394
|||| ||||| |||||||| ||||| |||||||| ||||||||||| ||| ||||
Sbjct 42192 TTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTG 42251
Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454
|| | ||||| | |||| |||||||| || || || || || | || ||||| |||
Sbjct 42252 GTCTTAATGTGTTGAGAATCATTAATGAGCCGACGGCTGCGGCAATTGCCTATGGTTTAG 42311
Query 451455 GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTC 451514
|| || | | || ||| | || |||||||||| ||||| || ||
Sbjct 42312 ACAA---GAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACAT 42368
Query 451515 ATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574
|||| || | | ||||||| ||||| |||| || || ||| | || |||||
Sbjct 42369 TTGATGTGTCCATCTTGACAATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTG 42428
Query 451575 ATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGG---AATGGTTGAAAACTG 451631
|||| || | |||||||||||| |||| ||| | |||| | | ||||| |
Sbjct 42429 ATACACACTTGGGAGGTGAAGATTTTGACAATCGTCTGGTGGATCACTTTGTGAAA---G 42485
Query 451632 ATGTTCAACGA-AAACTAAAAGTAGATATTTCTACTAACCAAAAAGCACTTAGACGTCTT 451690
| |||| | | ||| | ||| ||| | || | ||| | | || ||
Sbjct 42486 A-GTTCCAGAAGAAATTTGGTAAAGACATTCGTGACAATAAGCGTGCATTGCGTCGCCTG 42544
Query 451691 AAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTC-AACACAAACTACTAGTATAAA 451749
| |||| || ||| || ||| |||| | ||||| | ||| | || | | | |
Sbjct 42545 AGAACAGCATGTGAACGTGCGAAACGTACATTGAGTTCGAGCACCCA-AACGAATCTGGA 42603
Query 451750 CATTGA-TAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTGCTAAATTTG 451808
||||| | ||| | |||||| || |||| | || | |||| ||||| |||||
Sbjct 42604 GATTGACTCGTTGTG-TGATGGTATTGATTTTTACACGTCGATTACTCGTGCACGATTTG 42662
Query 451809 AATCAATTTGTTCCAGTATTTTTGCACGGGT--AATGAAACCTGTTGATCAAGTATTACA 451866
| | || | | | || | | | ||| | || |||||||| | | || |
Sbjct 42663 -AGGAGTTGAATGCCG-ATCTATTCCGTGGTACATTGGGTCCTGTTGAGAAGGCTTTGCG 42720
Query 451867 TGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACG 451926
||| |||| || ||| | ||||| | ||||| ||| | || || ||||| || ||
Sbjct 42721 AGATGCTAAGATGGATAAGGCCCAAATTCACGAAATAGTGTTGGTTGGTGGTTCCACTCG 42780
Query 451927 AATTCCTAAAATTCAAGATATGTT----GTCTTCTT-ATTTTGGAGGA---AAACAACTA 451978
|| ||||| | || | |||| | |||||| | | |||| ||||| |
Sbjct 42781 TATCCCTAAGGTACAGAAGCTGTTGCAGGACTTCTTCAACGGGAAGGAGTTGAACAA--A 42838
Query 451979 TGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATT 452038
| || | ||||| ||||||||||| || |||||||| || || || |||||||||
Sbjct 42839 TCTA------TTAATCCGGATGAAGCTGTGGCTTATGGTGCAGCTGTGCAGGCAGCTATT 42892
Query 452039 CTAACAGGT-TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCT 452097
|||| ||| || || ||| | ||| | ||||| | || || | || |
Sbjct 42893 CTAAGTGGTGACAAGTG-TGAGGCTGTGCAAGACTTGCTGTTGCTTGACGTGGCTCCATT 42951
Query 452098 ATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTC 452157
|| || || ||||||| |||||||| | ||||| | | ||||| || || |
Sbjct 42952 GTCACTGGGTCTTGAAACGGCTGGTGGTGTAATGACGGCTCTGATTAAGCGTAATACGAC 43011
Query 452158 TATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAAC 452217
|| || || ||| |||||| || | || || ||||| || |||||
Sbjct 43012 AATCCCGACGAAGCAGACTCAAACGTTCACGACGTACTCGGACAACCAGCCTGGTGTGCT 43071
Query 452218 TATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATT 452277
||| || ||||| || || || ||||| |||| || || ||| || || | ||
Sbjct 43072 TATCCAGGTGTTCGAGGGTGAGCGTGCTCTGACGAAGGACAACAATCTGCTTGGCAAGTT 43131
Query 452278 TACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGA 452337
|| ||| || || ||| || | || ||||| || ||||| | || | |||
Sbjct 43132 CGAACTCTCAGGTATCCCACCTGCTCCTCGTGGTACTCCCCAGATTGAGGTGACGTTTGA 43191
Query 452338 TGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGA 452397
| | || || || |||||||| || || ||| ||||| || | || || ||||
Sbjct 43192 TATAGACGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACAGG-GAAGCAGA 43250
Query 452398 A-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGG 452456
| || || || ||||| ||||| || |||||| | || || || |||||| |||||
Sbjct 43251 ACAAGATAACGATTACAAATGACAAGGGCCGTTTGACGAAGGAGGAGATTGAACGAATGG 43310
Query 452457 TAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490
||| || || || || | ||||| ||| |||||
Sbjct 43311 TAGCCGATGCGGACAAGTACAAGGCTGAGGATGA 43344
>seq4612
Length=25615
Score = 96.9 bits (106), Expect = 1e-14
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || || || |||||||||| || || || | || ||||| |
Sbjct 15501 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15560
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| ||
Sbjct 15561 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15620
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
||||||||| || ||| | || || || | ||||||||| | ||| || | ||||| ||
Sbjct 15621 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAA 15680
Query 391229 TAT 391231
||
Sbjct 15681 CAT 15683
Score = 96.9 bits (106), Expect = 1e-14
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || || || |||||||||| || || || | || ||||| |
Sbjct 15729 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15788
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| ||
Sbjct 15789 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15848
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
||||||||| || ||| | || || || | ||||||||| | ||| || | ||||| ||
Sbjct 15849 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAA 15908
Query 391229 TAT 391231
||
Sbjct 15909 CAT 15911
Score = 91.5 bits (100), Expect = 6e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || || || |||||||||| || || || | || ||||| |
Sbjct 15273 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15332
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| ||
Sbjct 15333 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15392
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
||||||||| || ||| | || || || | ||||||||| | ||| || | || || ||
Sbjct 15393 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 15452
Query 391229 TAT 391231
||
Sbjct 15453 CAT 15455
>seq13659
Length=5019
Score = 93.3 bits (102), Expect = 2e-13
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || || || || ||| |||| || || || ||||| | || ||||| | |
Sbjct 1325 ATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 1266
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| ||||| | | ||| || || ||||| || ||||| ||||||||||| |||
Sbjct 1265 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 1206
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|||||||| || ||| | || || || | ||||||||| | ||| || | || || ||
Sbjct 1205 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 1146
Query 391230 ATTGATAAGGA 391240
||| | || ||
Sbjct 1145 ATTCAGAAAGA 1135
Score = 91.5 bits (100), Expect = 6e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | || || || || || |||||||||| || || || | || ||||| |
Sbjct 1098 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 1039
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| ||
Sbjct 1038 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 979
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
||||||||| || ||| | || || || | ||||||||| | ||| || | || || ||
Sbjct 978 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 919
Query 391229 TAT 391231
||
Sbjct 918 CAT 916
>seq3361
Length=32766
Score = 86.0 bits (94), Expect = 2e-11
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 248487 ACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATC 248546
||| ||||| ||||| || ||| ||| | | ||| ||||||||| |||||||
Sbjct 2209 ACACGGACAGAAAGGTACTTGTGGAATTCGCTATCGTCAAGAAGATATGCCATTCACATG 2268
Query 248547 AGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTAT 248606
||||| || || |||||| | ||| | |||||||| | ||| |||| |||||||||||
Sbjct 2269 TGAAGGAATCACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGACTAT 2328
Query 248607 GGGACAATTA 248616
||||| |||
Sbjct 2329 TGGACATTTA 2338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975127194052340
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