Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5398 168 3e-36 seq6368 154 6e-32 seq2131 154 6e-32 seq4612 96.9 1e-14 seq13659 93.3 2e-13 seq3361 86.0 2e-11 >seq5398 Length=21971 Score = 168 bits (186), Expect = 3e-36 Identities = 263/373 (71%), Gaps = 10/373 (3%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 || || ||||| || || || || || ||||||| | || |||||||| || Sbjct 6472 AAGACGTTTGCCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCT 6413 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| ||| ||||| || || |||||||| | ||||| || || |||||||| Sbjct 6412 GAATCCTATCTTGGTAAAAAGGTAACCCATGCAGTAGTCACTGTCCCAGCCTATTTCAAC 6353 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCG 451410 ||||||||||| || ||||| |||||||| || ||| ||||||||||| ||| | |||| Sbjct 6352 GATGCACAACGCCAGGCAACCAAAGATGCTGGCACA-ATTGCTGGTTTGAATATAATTCG 6294 Query 451411 AATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC 451470 || ||||||||||| || || ||||| | || || || |||| | |||||| Sbjct 6293 GATCATTAATGAACCAACTGCTGCTGCGATTGCTTACGGTCTAG-------ATAAGAAAG 6241 Query 451471 A-GAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTAC 451529 | | || || |||||| | |||||||| |||| || || ||| || ||| ||| Sbjct 6240 ATGGTGAGAAGAATATTCTGATATTTGATCTTGGAGGTGGTACTTTCGACGTTTCATTAC 6181 Query 451530 TTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAG 451589 || ||||||| | || || || |||||| || || |||||||| || ||||| || | Sbjct 6180 TTACAATTGAGAACGGTGTGTTCGAAGTAGTTGCTACAAATGGTGACACACATCTTGGTG 6121 Query 451590 GTGAAGATATTGA 451602 | || || |||| Sbjct 6120 GAGAGGACTTTGA 6108 >seq6368 Length=18664 Score = 154 bits (170), Expect = 6e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || ||||| || || |||||||| || || || ||||| | || Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||||| |||| |||||||||||||| ||||| || || || || ||| Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| ||||||| | || |||||||| ||||||||| ||||| | | || |||||| Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 809 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| |||||||||| Sbjct 810 ATACAGAAGGAATCAACACTTCA 832 >seq2131 Length=43850 Score = 154 bits (170), Expect = 6e-32 Identities = 825/1294 (64%), Gaps = 43/1294 (3%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCT--GAAGAAATTTCATCTATGGTTCTTACTA 451274 ||||| ||||| | |||| || | |||| || || ||||| || ||||| | || | Sbjct 42074 TATAAGGGTGAGA--AAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTGACAA 42131 Query 451275 AAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTG 451334 ||||||| || || ||| ||| | || |||| | ||| || || || || | Sbjct 42132 AAATGAAGGAGGTTGCTGAAAGTTATTTGGGCAGGACAGTGAGTGACGCGGTTATAACAG 42191 Query 451335 TTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTG 451394 |||| ||||| |||||||| ||||| |||||||| ||||||||||| ||| |||| Sbjct 42192 TTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTATAGCTG 42251 Query 451395 GTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 || | ||||| | |||| |||||||| || || || || || | || ||||| ||| Sbjct 42252 GTCTTAATGTGTTGAGAATCATTAATGAGCCGACGGCTGCGGCAATTGCCTATGGTTTAG 42311 Query 451455 GAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTC 451514 || || | | || ||| | || |||||||||| ||||| || || Sbjct 42312 ACAA---GAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTACAT 42368 Query 451515 ATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTG 451574 |||| || | | ||||||| ||||| |||| || || ||| | || ||||| Sbjct 42369 TTGATGTGTCCATCTTGACAATTGAGGATGGTATATTCGAGGTGAAGTCTACTGCTGGTG 42428 Query 451575 ATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGG---AATGGTTGAAAACTG 451631 |||| || | |||||||||||| |||| ||| | |||| | | ||||| | Sbjct 42429 ATACACACTTGGGAGGTGAAGATTTTGACAATCGTCTGGTGGATCACTTTGTGAAA---G 42485 Query 451632 ATGTTCAACGA-AAACTAAAAGTAGATATTTCTACTAACCAAAAAGCACTTAGACGTCTT 451690 | |||| | | ||| | ||| ||| | || | ||| | | || || Sbjct 42486 A-GTTCCAGAAGAAATTTGGTAAAGACATTCGTGACAATAAGCGTGCATTGCGTCGCCTG 42544 Query 451691 AAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTTC-AACACAAACTACTAGTATAAA 451749 | |||| || ||| || ||| |||| | ||||| | ||| | || | | | | Sbjct 42545 AGAACAGCATGTGAACGTGCGAAACGTACATTGAGTTCGAGCACCCA-AACGAATCTGGA 42603 Query 451750 CATTGA-TAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTGCTAAATTTG 451808 ||||| | ||| | |||||| || |||| | || | |||| ||||| ||||| Sbjct 42604 GATTGACTCGTTGTG-TGATGGTATTGATTTTTACACGTCGATTACTCGTGCACGATTTG 42662 Query 451809 AATCAATTTGTTCCAGTATTTTTGCACGGGT--AATGAAACCTGTTGATCAAGTATTACA 451866 | | || | | | || | | | ||| | || |||||||| | | || | Sbjct 42663 -AGGAGTTGAATGCCG-ATCTATTCCGTGGTACATTGGGTCCTGTTGAGAAGGCTTTGCG 42720 Query 451867 TGATTCTAAAATTAGTAAAGATAAAATTGATGAAATTGTGCTTGTAGGAGGTTCTACACG 451926 ||| |||| || ||| | ||||| | ||||| ||| | || || ||||| || || Sbjct 42721 AGATGCTAAGATGGATAAGGCCCAAATTCACGAAATAGTGTTGGTTGGTGGTTCCACTCG 42780 Query 451927 AATTCCTAAAATTCAAGATATGTT----GTCTTCTT-ATTTTGGAGGA---AAACAACTA 451978 || ||||| | || | |||| | |||||| | | |||| ||||| | Sbjct 42781 TATCCCTAAGGTACAGAAGCTGTTGCAGGACTTCTTCAACGGGAAGGAGTTGAACAA--A 42838 Query 451979 TGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATT 452038 | || | ||||| ||||||||||| || |||||||| || || || ||||||||| Sbjct 42839 TCTA------TTAATCCGGATGAAGCTGTGGCTTATGGTGCAGCTGTGCAGGCAGCTATT 42892 Query 452039 CTAACAGGT-TCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCT 452097 |||| ||| || || ||| | ||| | ||||| | || || | || | Sbjct 42893 CTAAGTGGTGACAAGTG-TGAGGCTGTGCAAGACTTGCTGTTGCTTGACGTGGCTCCATT 42951 Query 452098 ATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTC 452157 || || || ||||||| |||||||| | ||||| | | ||||| || || | Sbjct 42952 GTCACTGGGTCTTGAAACGGCTGGTGGTGTAATGACGGCTCTGATTAAGCGTAATACGAC 43011 Query 452158 TATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAAC 452217 || || || ||| |||||| || | || || ||||| || ||||| Sbjct 43012 AATCCCGACGAAGCAGACTCAAACGTTCACGACGTACTCGGACAACCAGCCTGGTGTGCT 43071 Query 452218 TATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATT 452277 ||| || ||||| || || || ||||| |||| || || ||| || || | || Sbjct 43072 TATCCAGGTGTTCGAGGGTGAGCGTGCTCTGACGAAGGACAACAATCTGCTTGGCAAGTT 43131 Query 452278 TACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGA 452337 || ||| || || ||| || | || ||||| || ||||| | || | ||| Sbjct 43132 CGAACTCTCAGGTATCCCACCTGCTCCTCGTGGTACTCCCCAGATTGAGGTGACGTTTGA 43191 Query 452338 TGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCAGA 452397 | | || || || |||||||| || || ||| ||||| || | || || |||| Sbjct 43192 TATAGACGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACAGG-GAAGCAGA 43250 Query 452398 A-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAATGG 452456 | || || || ||||| ||||| || |||||| | || || || |||||| ||||| Sbjct 43251 ACAAGATAACGATTACAAATGACAAGGGCCGTTTGACGAAGGAGGAGATTGAACGAATGG 43310 Query 452457 TAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 ||| || || || || | ||||| ||| ||||| Sbjct 43311 TAGCCGATGCGGACAAGTACAAGGCTGAGGATGA 43344 >seq4612 Length=25615 Score = 96.9 bits (106), Expect = 1e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||||| || || || | || ||||| | Sbjct 15501 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15560 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 15561 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15620 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | ||||| || Sbjct 15621 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAA 15680 Query 391229 TAT 391231 || Sbjct 15681 CAT 15683 Score = 96.9 bits (106), Expect = 1e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||||| || || || | || ||||| | Sbjct 15729 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15788 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 15789 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15848 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | ||||| || Sbjct 15849 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAA 15908 Query 391229 TAT 391231 || Sbjct 15909 CAT 15911 Score = 91.5 bits (100), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||||| || || || | || ||||| | Sbjct 15273 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15332 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 15333 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15392 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 15393 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 15452 Query 391229 TAT 391231 || Sbjct 15453 CAT 15455 >seq13659 Length=5019 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || ||| |||| || || || ||||| | || ||||| | | Sbjct 1325 ATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 1266 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | ||| || || ||||| || ||||| ||||||||||| ||| Sbjct 1265 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 1206 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 1205 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 1146 Query 391230 ATTGATAAGGA 391240 ||| | || || Sbjct 1145 ATTCAGAAAGA 1135 Score = 91.5 bits (100), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || |||||||||| || || || | || ||||| | Sbjct 1098 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 1039 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| ||||| | | ||| || || ||||| || ||||| ||||||||||| || Sbjct 1038 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 979 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||||||||| || ||| | || || || | ||||||||| | ||| || | || || || Sbjct 978 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 919 Query 391229 TAT 391231 || Sbjct 918 CAT 916 >seq3361 Length=32766 Score = 86.0 bits (94), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 248487 ACATGGACAAAAAGGAACAGTTGGTATTACTTTGCCACAAAGAGATATGCCTTTCACATC 248546 ||| ||||| ||||| || ||| ||| | | ||| ||||||||| ||||||| Sbjct 2209 ACACGGACAGAAAGGTACTTGTGGAATTCGCTATCGTCAAGAAGATATGCCATTCACATG 2268 Query 248547 AGAAGGTATGACTCCAGATTTAATTTTCAATCCACATGGTATGCCTACACGTATGACTAT 248606 ||||| || || |||||| | ||| | |||||||| | ||| |||| ||||||||||| Sbjct 2269 TGAAGGAATCACACCAGATATTATTATTAATCCACACGCTATTCCTAGTCGTATGACTAT 2328 Query 248607 GGGACAATTA 248616 ||||| ||| Sbjct 2329 TGGACATTTA 2338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975127194052340