Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2131 322 4e-82 seq5398 172 4e-37 seq1278 91.5 1e-12 >seq2131 Length=43850 Score = 322 bits (356), Expect = 4e-82 Identities = 969/1478 (66%), Gaps = 30/1478 (2%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| || || |||||||| || || || | |||||| || || ||||| Sbjct 43233 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 43174 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || || || | ||||||||||||| ||| | | || | || || ||| Sbjct 43173 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 43114 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || || || | || ||||||||||| | |||||| || ||| || || Sbjct 43113 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 43054 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 517487 || || || || || || | | || | | || || ||||| || || | | || Sbjct 43053 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGGATTGTCGTATTACGCTTAA 42996 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | | ||||| | |||||| || ||||| | ||| || || | |||| || |||| Sbjct 42995 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 42936 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 517606 | | | | ||| | ||| || || | |||| ||||||||||| || | | Sbjct 42935 GCAACAGCAAGTCTTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 42877 Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666 || |||||||| || ||||||||||| ||||||| || || || | | || || ||| Sbjct 42876 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 42817 Query 517667 AAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 517725 || || | || || | || | | |||||||| ||||||| || || ||||| || || Sbjct 42816 AAGAAGTCCTGCAACAGCTTCTGT-ACCTTAGGGATACGAGTGGAACCACCAACCAACAC 42758 Query 517726 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 517785 ||||| || | || | ||||||| || | ||| ||| | || ||||| || | Sbjct 42757 TATTTCGTGAATTTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGACC 42698 Query 517786 AAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GT 517842 | | | || | || | | | || || ||| || | ||||| || || Sbjct 42697 CAATGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACGT 42638 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 517902 | | | ||||||| || || |||| || |||| || | | ||||| || || Sbjct 42637 G---TAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCGA 42581 Query 517903 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA 517962 | | || |||||| ||||||||||||||||| || || | || || || ||| | Sbjct 42580 ACTCAATGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTTA 42523 Query 517963 TTGATTCAAATCTGTTTT--ATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--A 518018 ||| | ||| | ||| | |||| ||| ||| |||| ||| | || | || | Sbjct 42522 TTGTCACGAATGTCTTTACCAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCA 42465 Query 518019 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 518078 ||||||| |||||||||||||||||||| | |||| || | |||| | || | || Sbjct 42464 GACGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGA 42405 Query 518079 AAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAA 518138 | | ||||| |||| | ||| | | |||||| || |||||||||| |||||| | Sbjct 42404 ATATACCATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATA 42345 Query 518139 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 518198 | | ||||| || | || || || | |||||| |||| || ||||| | Sbjct 42344 TCAACACATTACGCTCACCACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCCG 42285 Query 518199 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 518258 | || |||||||| |||||||| |||||||||||||| || ||||||||||| || | Sbjct 42284 TCGGCTCATTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTG 42225 Query 518259 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCT 518317 |||| | ||| || || || || |||||||| || ||||| || ||| | ||| || Sbjct 42224 CTTGACGTTGACTGTCATTGAAGTAAGCAGGAACTGTTATAACCGCGTCACTCACTGTCC 42165 Query 518318 TTACCAATATAAGCGCTT---GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374 | |||| |||| ||| || | |||||||| | || | ||| || ||||| Sbjct 42164 TGCCCAA-ATAA---CTTTCAGCAACCTCCTTCATTTTTGTCAACACCATCGACGAAATC 42109 Query 518375 TGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 518434 | || | ||| | ||| ||| | ||| || || | | ||| | Sbjct 42108 TCCTCCGCGGAGAACAACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTACCA 42049 Query 518435 CCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTA 518494 || || | || || | ||||||||| | |||||||| ||||| | | |||| | Sbjct 42048 CCGACTTGAACCACCTCAAATGGCCAATGCTTCATATCACTCTGAACTGATGGATCATCA 41989 Query 518495 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCT 518554 ||| | ||| |||| || || |||||||| | ||||| ||||||||||| || || Sbjct 41988 AAACGACGACCGATTAGCCGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCACT 41929 Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 || | || ||| |||| ||||| | | | || | ||||| || | ||||| || Sbjct 41928 TGGTTCTTTGCTCCATCACCAATTAAACGCTCAGCATCTGTGAACGCCACATAACTCGGT 41869 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674 || || | ||||| |||||||| ||||| || || ||||| |||| || | ||||| Sbjct 41868 GTCGTTCTGTTACCCTGATCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACACCA 41809 Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 ||||| | | ||||| || | ||| || ||||| || Sbjct 41808 ACACACGAATATGTTGTACCAAGATCGATCCCAATGGC 41771 Score = 123 bits (136), Expect = 2e-22 Identities = 354/537 (66%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309 || ||| | |||| || || |||||||| || || || | |||||| || || ||||| Sbjct 37219 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 37160 Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369 || || || | ||||||||||||| ||| | | || | || || ||| Sbjct 37159 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 37100 Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429 || || || || | || ||||||||||| | |||||| || ||| || || Sbjct 37099 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 37040 Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 517487 || || || || || || | | || | | || || ||||| || || | | || Sbjct 37039 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGGATTGTCGTATTACGCTTAA 36982 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | | ||||| | |||||| || ||||| | ||| || || | |||| || |||| Sbjct 36981 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 36922 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 517606 | | | | ||| | ||| || || | |||| ||||||||||| || | | Sbjct 36921 GCAACAGCAAGTCTTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 36863 Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666 || |||||||| || ||||||||||| ||||||| || || || | | || || ||| Sbjct 36862 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 36803 Query 517667 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 517725 || || | || || || || | ||||||||| ||||||| || || ||||| || || Sbjct 36802 AAGAAGTCCTGCAACAACTT-TTGTACCTTAGGGATACGAGTGGAACCACCAACCAACAC 36744 Query 517726 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 ||||| || | ||| | ||||||| || | ||| ||| | || ||||| || Sbjct 36743 TATTTCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGG 36687 >seq5398 Length=21971 Score = 172 bits (190), Expect = 4e-37 Identities = 384/570 (67%), Gaps = 16/570 (3%) Strand=Plus/Plus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || ||||| || | |||||| || || | |||| | || |||| | ||||| ||| Sbjct 6198 GTACCACCTCCAAGATCAAATATCAGAATATTCTTCTCACCATCTT---TCTTATCTAGA 6254 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| ||||||||||||||||||||||| || | | | ||| | ||||||| Sbjct 6255 CCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGAATTATATTCAAACCAGCA 6314 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| | || |||||||| || || || | ||||| |||||| ||||| || || ||||| Sbjct 6315 ATTGTGCCAGCATCTTTGGTTGCCTGGCGTTGTGCATCGTTGAAATAGGCTGGGACAGTG 6374 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 | || |||| ||||| | |||||||| ||| | || | |||||| || | | Sbjct 6375 ACTACTGCATGGGTTACCTTTTTACCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 6434 Query 518357 AAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGAT---ATGAT 518413 || | ||| | || || | ||||||| | | |||| ||| |||| | | | Sbjct 6435 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTT 6490 Query 518414 -ACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATC 518472 ||||| | ||||||||| || ||||| ||| ||| || ||| | || || Sbjct 6491 AACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAGTGAGTTATGTC 6550 Query 518473 TGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGT 518532 ||| ||| || |||| || | || || || | || || | || ||||| || Sbjct 6551 ATTTTGCACAGTTGATTCATCGAATTTCCTGCCGATAAGTCTCTTGACGTCGAAAATTGT 6610 Query 518533 ATTGGTTGGA-TTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT---CTG 518588 || ||| || || |||| || | ||| || ||||| ||||| | | | | || Sbjct 6611 GTTTTCCGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAAACGCTCGCCTT 6669 Query 518589 TCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTT 518648 | || |||| |||||||| ||||| | | ||||| ||||||||||||||||| | Sbjct 6670 CCGGAGTGAATGCTACATATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATCT 6729 Query 518649 CAACTTTACCATTTTGCCATACACCTACAC 518678 ||||| || ||| ||||||| |||| Sbjct 6730 CAACTCGGCCTCCTTGAAATACACCAACAC 6759 >seq1278 Length=56774 Score = 91.5 bits (100), Expect = 1e-12 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 671617 AGGTTTTTGTCGAAATT-CTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAG 671675 ||||||| | ||||| |||||||| ||| |||| ||| | |||||| || ||||| | Sbjct 12095 AGGTTTTGTTGGAAATAGCTTTTATTCAGG-TCTTTCACCATCTGAATTCTTTTTCCATG 12037 Query 671676 TAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGGTTATA 671735 ||| ||||||||||| | | | |||| ||| | |||||||| ||||| ||||||| Sbjct 12036 CTATGAGTGGTCGTGAAGGATTGACTGATACTGCTGTAAAAACTGCAGATACAGGTTATA 11977 Query 671736 TTCAAAGAAAACTTGTTAA 671754 | ||| ||| ||| || || Sbjct 11976 TGCAACGAAGACTGGTCAA 11958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779663447968630