Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq2131 322 4e-82
seq5398 172 4e-37
seq1278 91.5 1e-12
>seq2131
Length=43850
Score = 322 bits (356), Expect = 4e-82
Identities = 969/1478 (66%), Gaps = 30/1478 (2%)
Strand=Plus/Minus
Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309
|| ||| | |||| || || |||||||| || || || | |||||| || || |||||
Sbjct 43233 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 43174
Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369
|| || || | ||||||||||||| ||| | | || | || || |||
Sbjct 43173 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 43114
Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429
|| || || || | || ||||||||||| | |||||| || ||| || ||
Sbjct 43113 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 43054
Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 517487
|| || || || || || | | || | | || || ||||| || || | | ||
Sbjct 43053 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGGATTGTCGTATTACGCTTAA 42996
Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547
| | | ||||| | |||||| || ||||| | ||| || || | |||| || ||||
Sbjct 42995 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 42936
Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 517606
| | | | ||| | ||| || || | |||| ||||||||||| || | |
Sbjct 42935 GCAACAGCAAGTCTTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 42877
Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666
|| |||||||| || ||||||||||| ||||||| || || || | | || || |||
Sbjct 42876 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 42817
Query 517667 AAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 517725
|| || | || || | || | | |||||||| ||||||| || || ||||| || ||
Sbjct 42816 AAGAAGTCCTGCAACAGCTTCTGT-ACCTTAGGGATACGAGTGGAACCACCAACCAACAC 42758
Query 517726 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 517785
||||| || | || | ||||||| || | ||| ||| | || ||||| || |
Sbjct 42757 TATTTCGTGAATTTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGACC 42698
Query 517786 AAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GT 517842
| | | || | || | | | || || ||| || | ||||| || ||
Sbjct 42697 CAATGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACGT 42638
Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 517902
| | | ||||||| || || |||| || |||| || | | ||||| || ||
Sbjct 42637 G---TAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCGA 42581
Query 517903 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA 517962
| | || |||||| ||||||||||||||||| || || | || || || ||| |
Sbjct 42580 ACTCAATGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTTA 42523
Query 517963 TTGATTCAAATCTGTTTT--ATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--A 518018
||| | ||| | ||| | |||| ||| ||| |||| ||| | || | || |
Sbjct 42522 TTGTCACGAATGTCTTTACCAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCA 42465
Query 518019 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 518078
||||||| |||||||||||||||||||| | |||| || | |||| | || | ||
Sbjct 42464 GACGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGA 42405
Query 518079 AAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAA 518138
| | ||||| |||| | ||| | | |||||| || |||||||||| |||||| |
Sbjct 42404 ATATACCATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATA 42345
Query 518139 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 518198
| | ||||| || | || || || | |||||| |||| || ||||| |
Sbjct 42344 TCAACACATTACGCTCACCACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCCG 42285
Query 518199 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 518258
| || |||||||| |||||||| |||||||||||||| || ||||||||||| || |
Sbjct 42284 TCGGCTCATTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTG 42225
Query 518259 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCT 518317
|||| | ||| || || || || |||||||| || ||||| || ||| | ||| ||
Sbjct 42224 CTTGACGTTGACTGTCATTGAAGTAAGCAGGAACTGTTATAACCGCGTCACTCACTGTCC 42165
Query 518318 TTACCAATATAAGCGCTT---GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374
| |||| |||| ||| || | |||||||| | || | ||| || |||||
Sbjct 42164 TGCCCAA-ATAA---CTTTCAGCAACCTCCTTCATTTTTGTCAACACCATCGACGAAATC 42109
Query 518375 TGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTA 518434
| || | ||| | ||| ||| | ||| || || | | ||| |
Sbjct 42108 TCCTCCGCGGAGAACAACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTACCA 42049
Query 518435 CCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTA 518494
|| || | || || | ||||||||| | |||||||| ||||| | | |||| |
Sbjct 42048 CCGACTTGAACCACCTCAAATGGCCAATGCTTCATATCACTCTGAACTGATGGATCATCA 41989
Query 518495 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCT 518554
||| | ||| |||| || || |||||||| | ||||| ||||||||||| || ||
Sbjct 41988 AAACGACGACCGATTAGCCGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCACT 41929
Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614
|| | || ||| |||| ||||| | | | || | ||||| || | ||||| ||
Sbjct 41928 TGGTTCTTTGCTCCATCACCAATTAAACGCTCAGCATCTGTGAACGCCACATAACTCGGT 41869
Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674
|| || | ||||| |||||||| ||||| || || ||||| |||| || | |||||
Sbjct 41868 GTCGTTCTGTTACCCTGATCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACACCA 41809
Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712
||||| | | ||||| || | ||| || ||||| ||
Sbjct 41808 ACACACGAATATGTTGTACCAAGATCGATCCCAATGGC 41771
Score = 123 bits (136), Expect = 2e-22
Identities = 354/537 (66%), Gaps = 8/537 (1%)
Strand=Plus/Minus
Query 517250 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 517309
|| ||| | |||| || || |||||||| || || || | |||||| || || |||||
Sbjct 37219 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 37160
Query 517310 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 517369
|| || || | ||||||||||||| ||| | | || | || || |||
Sbjct 37159 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 37100
Query 517370 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 517429
|| || || || | || ||||||||||| | |||||| || ||| || ||
Sbjct 37099 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 37040
Query 517430 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 517487
|| || || || || || | | || | | || || ||||| || || | | ||
Sbjct 37039 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGGATTGTCGTATTACGCTTAA 36982
Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547
| | | ||||| | |||||| || ||||| | ||| || || | |||| || ||||
Sbjct 36981 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 36922
Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 517606
| | | | ||| | ||| || || | |||| ||||||||||| || | |
Sbjct 36921 GCAACAGCAAGTCTTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 36863
Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666
|| |||||||| || ||||||||||| ||||||| || || || | | || || |||
Sbjct 36862 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 36803
Query 517667 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 517725
|| || | || || || || | ||||||||| ||||||| || || ||||| || ||
Sbjct 36802 AAGAAGTCCTGCAACAACTT-TTGTACCTTAGGGATACGAGTGGAACCACCAACCAACAC 36744
Query 517726 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782
||||| || | ||| | ||||||| || | ||| ||| | || ||||| ||
Sbjct 36743 TATTTCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGG 36687
>seq5398
Length=21971
Score = 172 bits (190), Expect = 4e-37
Identities = 384/570 (67%), Gaps = 16/570 (3%)
Strand=Plus/Plus
Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176
|| ||||| || | |||||| || || | |||| | || |||| | ||||| |||
Sbjct 6198 GTACCACCTCCAAGATCAAATATCAGAATATTCTTCTCACCATCTT---TCTTATCTAGA 6254
Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236
|| || |||| ||||||||||||||||||||||| || | | | ||| | |||||||
Sbjct 6255 CCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGAATTATATTCAAACCAGCA 6314
Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296
||| | || |||||||| || || || | ||||| |||||| ||||| || || |||||
Sbjct 6315 ATTGTGCCAGCATCTTTGGTTGCCTGGCGTTGTGCATCGTTGAAATAGGCTGGGACAGTG 6374
Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356
| || |||| ||||| | |||||||| ||| | || | |||||| || | |
Sbjct 6375 ACTACTGCATGGGTTACCTTTTTACCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 6434
Query 518357 AAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGAT---ATGAT 518413
|| | ||| | || || | ||||||| | | |||| ||| |||| | | |
Sbjct 6435 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTT 6490
Query 518414 -ACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATC 518472
||||| | ||||||||| || ||||| ||| ||| || ||| | || ||
Sbjct 6491 AACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAGTGAGTTATGTC 6550
Query 518473 TGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGT 518532
||| ||| || |||| || | || || || | || || | || ||||| ||
Sbjct 6551 ATTTTGCACAGTTGATTCATCGAATTTCCTGCCGATAAGTCTCTTGACGTCGAAAATTGT 6610
Query 518533 ATTGGTTGGA-TTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT---CTG 518588
|| ||| || || |||| || | ||| || ||||| ||||| | | | | ||
Sbjct 6611 GTTTTCCGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAAACGCTCGCCTT 6669
Query 518589 TCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTT 518648
| || |||| |||||||| ||||| | | ||||| ||||||||||||||||| |
Sbjct 6670 CCGGAGTGAATGCTACATATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATCT 6729
Query 518649 CAACTTTACCATTTTGCCATACACCTACAC 518678
||||| || ||| ||||||| ||||
Sbjct 6730 CAACTCGGCCTCCTTGAAATACACCAACAC 6759
>seq1278
Length=56774
Score = 91.5 bits (100), Expect = 1e-12
Identities = 105/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 671617 AGGTTTTTGTCGAAATT-CTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTTCCAAG 671675
||||||| | ||||| |||||||| ||| |||| ||| | |||||| || ||||| |
Sbjct 12095 AGGTTTTGTTGGAAATAGCTTTTATTCAGG-TCTTTCACCATCTGAATTCTTTTTCCATG 12037
Query 671676 TAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGGTTATA 671735
||| ||||||||||| | | | |||| ||| | |||||||| ||||| |||||||
Sbjct 12036 CTATGAGTGGTCGTGAAGGATTGACTGATACTGCTGTAAAAACTGCAGATACAGGTTATA 11977
Query 671736 TTCAAAGAAAACTTGTTAA 671754
| ||| ||| ||| || ||
Sbjct 11976 TGCAACGAAGACTGGTCAA 11958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779663447968630
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