Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2131 410 2e-109 seq5398 158 2e-33 seq4326 86.0 8e-12 seq973 84.2 3e-11 >seq2131 Length=43850 Score = 410 bits (454), Expect = 2e-109 Identities = 1060/1602 (66%), Gaps = 20/1602 (1%) Strand=Plus/Minus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||| ||||| ||| | || ||||| |||||||| ||||| |||||| || || || Sbjct 43348 CTTCTCATCCTCAGCCTTGTACTTGTCCGCATCGGCTACCATTCGTTCAATCTCCTCCTT 43289 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTAT 6683 || || | ||||| ||||| |||||||| ||||| ||| | || || | |||| | Sbjct 43288 CGTCAAACGGCCCTTGTCATTTGTAATCGTTATCTTGTTCTGCTTC-CCTGTACCCTTGT 43230 Query 6684 CTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTG 6743 | ||||| ||| |||| |||||| || || || | ||| ||| | || | ||| || | Sbjct 43229 CAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATCTGGG 43170 Query 6744 GTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTAT 6803 | ||||| | || || | ||| ||||| | | || || | ||||| | | |||| | Sbjct 43169 GAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTGTTGT 43110 Query 6804 CCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTT 6863 || ||| | ||| ||||| || | || | || ||| |||| || || || Sbjct 43109 CCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTGTCCG 43050 Query 6864 GTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCG 6923 ||| | ||| |||| | ||| | || || |||||||| | | ||| | | Sbjct 43049 AGTACGTCGTGAACGTTTGAGTCTGCTTCGTCGGGATTGTCGTATTACGCTTAATCAGAG 42990 Query 6924 GGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 ||||| | |||||| ||||| || || || |||| || | |||||| | | | Sbjct 42989 CCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAAGCAACA 42930 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 || |||||| |||| || | ||||| ||| || || || || || | || | Sbjct 42929 GCAAGTCTTGCACAGCCTCACACTTGTCACCACTTAGAATAGCTGCCTGCACAGCTGCAC 42870 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 | || || || || ||||| || ||||| | ||| |||| || || ||||| || | | Sbjct 42869 CATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTGAAGAAGT 42810 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 || |||| | || | || ||||| || || || ||||| ||||| || ||||| | Sbjct 42809 CCTGCAACAGCTTCTGTACCTTAGGGATACGAGTGGAACCACCAACCAACACTATTTCGT 42750 Query 7164 TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT 7223 | || | ||||| ||||| | ||||| | | || || ||||| ||| || Sbjct 42749 GAATTTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGACCCA---ATG 42693 Query 7224 TAC---GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGA 7280 ||| |||| | || | || |||||||| |||||||| ||||| || || || | Sbjct 42692 TACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACGTGTAAA 42633 Query 7281 AATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACG 7340 |||||| || || | ||||| ||||| || | | ||||| | ||||| || | Sbjct 42632 AATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCGAACTCAATG 42573 Query 7341 TTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAA 7400 | || || || || ||||| || |||| | ||||| | |||||| || | || Sbjct 42572 TACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCACGCTTATTGTCACGAA 42513 Query 7401 TATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 | ||||| | ||| | ||||||| || | ||||| | || | || Sbjct 42512 TGTCTTTACCAAATTTCTTCTGGAACTCTTTCACA-AAGTGATCCACCAGACGATTGTCA 42454 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 ||||||||||| |||||||||||||| || || || | || || || || ||||| | Sbjct 42453 AAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGAATATACCATCC 42394 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | || | || |||||||| ||||||||||||| ||||| || | || || Sbjct 42393 TCAATTGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATATCAACACATTA 42334 Query 7580 GTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTA 7639 || | | ||||| || | ||| || || || ||||| ||||| || |||||| Sbjct 42333 CGCTCACCACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCCGTCGGCTCATTA 42274 Query 7640 ATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 || || | || ||| || || ||||| |||| | ||||||||||| ||||| ||||| Sbjct 42273 ATGATTCTCAACACA-TTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTG 42215 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 || || ||||| || || || |||| |||||||| | ||| || | || | ||| Sbjct 42214 ACTGTCATTGAAGTAAGCAGGAACTGTTATAACCGCGTCACTCACTGTCCTGCCCAAATA 42155 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAA 7818 ||| || | || |||||||| || | |||||||| |||||||| || || | || Sbjct 42154 ACTTTCAGCAACCTCCTTCATTTTTGTCAACACCATCGACGAAATCTCCTCCGCGGAGAA 42095 Query 7819 CTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGAT 7878 | || | ||||| ||| | ||||| |||| | | ||| || | | | | Sbjct 42094 CAACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTA---CCACCGACTTGAAC 42038 Query 7879 AACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGG-TCCGAAAACTTTCTTC 7937 |||| | | | ||||| |||||||| || || ||| ||| || ||| | | Sbjct 42037 CACCTCAAATGGCCAATGCTTCATATC-ACTCTGAACTGATGGATCATCAAAACGACGAC 41979 Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997 |||| || ||||| |||||||| ||||| ||| | || || || || ||||||||| | Sbjct 41978 CGATTAGCCGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCACTTGGTTCTTTG 41919 Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057 | | || || || | ||| ||| | || || ||||| || || || ||||||| Sbjct 41918 CTCCATCACCAATTAAACGCTCAGCA---TCTGTGAACGCCACATAACTCGGTGTCGTTC 41862 Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117 || || || || || ||||| || || || | | | || | || || || |||| Sbjct 41861 TGTTACCCTGATCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACACCAACACACG 41802 Query 8118 AATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTT 8159 |||| ||||| || | ||| || || || || | || ||||| Sbjct 41801 AATATGTTGTACCAAGATCGATCCCAATGGCGTTAGGCATTT 41760 >seq5398 Length=21971 Score = 158 bits (174), Expect = 2e-33 Identities = 208/288 (72%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 7532 AACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCT 7591 || ||||| || || |||||||| || || ||||| || || | ||| | || | ||| Sbjct 6183 AATGAAACGTCGAAAGTACCACCTCCAAGATCAAATATCAGAATATTCTTCTCACCATCT 6242 Query 7592 TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGA 7651 || |||||| |||||||| || || || || || |||||||||||||| || |||| Sbjct 6243 TT---CTTATCTAGACCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGAATT 6299 Query 7652 CAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAG 7711 |||| |||||||| || | |||||||| || || || ||||| | |||||| || Sbjct 6300 ATATTCAAACCAGCAATTGTGCCAGCATCTTTGGTTGCCTGGCGTTGTGCATCGTTGAAA 6359 Query 7712 TAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATA 7771 ||||| ||||| || || || || | || || || ||||| ||||| ||||| || | Sbjct 6360 TAGGCTGGGACAGTGACTACTGCATGGGTTACCTTTTTACCAAGATAGGATTCAGCAAAC 6419 Query 7772 TCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 |||||||| || | ||||| | || ||||| || | |||||| Sbjct 6420 TCTTTCATCTTCCCTAACACCATAGCAGAGATCTCCTCTGGGGCAAAC 6467 >seq4326 Length=27076 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 115062 ATAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCAT 115121 ||| ||||| || ||||| |||||||||||||| || || |||| ||||||||| ||||| Sbjct 15984 ATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTCCAT 16043 Query 115122 AAAATCAAAGGGATT 115136 ||| ||||| ||||| Sbjct 16044 AAAGTCAAAAGGATT 16058 >seq973 Length=64032 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 105826 TGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTA 105885 ||||| | || |||||||||||||| ||| ||| ||||| ||||| | ||| Sbjct 13444 TGAACATTTATTCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTA 13503 Query 105886 TCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGT 105945 |||||||| || || |||||||| || || | | || || ||||| ||| | ||| Sbjct 13504 TCGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGT 13563 Query 105946 GGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATG 105986 ||| |||| || ||||| || || || || |||| ||||| Sbjct 13564 GGTTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATG 13604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634947380918200