Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq13659 161 2e-34
seq4612 145 2e-29
seq6368 129 1e-24
>seq13659
Length=5019
Score = 161 bits (178), Expect = 2e-34
Identities = 161/209 (77%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || ||||| |||||||| ||||| ||||| || | ||||| | ||||||||
Sbjct 1117 ACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1176
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||||||||| ||||| || | ||||||||||| |||||||| ||||||||||||||
Sbjct 1177 AACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 1236
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || || || |||||||| || || | || || || | |||| |||||||
Sbjct 1237 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTT 1296
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||||| || ||||| || | ||||||
Sbjct 1297 CCTGTCAATGTCTTTACAAAGATTTGCAT 1325
Score = 134 bits (148), Expect = 3e-26
Identities = 158/214 (74%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
|| |||||| || | || |||||||| || || ||||| || | ||||| | |||||
Sbjct 885 CAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATC 944
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||| | ||||||||| ||||| || | ||||||||||| |||||||| |||||||||||
Sbjct 945 TTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTC 1004
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||| || || || || |||||||| || || | || || || | || | |||
Sbjct 1005 TTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGT 1064
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||| || ||||| || || || || | |||||||
Sbjct 1065 CTTACCAGTCAACGTCTTCACAAAGATTTGCATT 1098
>seq4612
Length=25615
Score = 145 bits (160), Expect = 2e-29
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || ||||| |||||||| || || |||||||| | ||||| | ||||||||
Sbjct 15710 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCC 15651
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||||||||| ||||| || | ||||||||||| |||||||| ||||||||||||||
Sbjct 15650 AACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 15591
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || || || |||||||| || || | || || || | || | ||||||
Sbjct 15590 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTA 15531
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| ||||| || || || || | |||||||
Sbjct 15530 CCAGTCAACGTCTTCACAAAGATTTGCATT 15501
Score = 140 bits (154), Expect = 7e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || ||||| |||||||| || || ||||| || | ||||| | ||||||||
Sbjct 15482 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 15423
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||||||||| ||||| || | ||||||||||| |||||||| ||||||||||||||
Sbjct 15422 AACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 15363
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || || || |||||||| || || | || || || | || | ||||||
Sbjct 15362 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTA 15303
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| ||||| || || || || | |||||||
Sbjct 15302 CCAGTCAACGTCTTCACAAAGATTTGCATT 15273
Score = 138 bits (152), Expect = 3e-27
Identities = 159/214 (74%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
|| |||||| || | || |||||||| || || |||||||| | ||||| | |||||
Sbjct 15942 CAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATC 15883
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||| | ||||||||| ||||| || | ||||||||||| |||||||| |||||||||||
Sbjct 15882 TTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTC 15823
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||| || || || || |||||||| || || | || || || | || | |||
Sbjct 15822 TTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGT 15763
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
||| || ||||| || || || || | |||||||
Sbjct 15762 CTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729
>seq6368
Length=18664
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| ||||| || || || || || ||||| || |||| |||||||| ||||||||
Sbjct 838 ACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCC 779
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| || || || || || || || |||||||||||||| || ||||||||||| ||||||
Sbjct 778 AGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGA 719
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||| || || || || || | | || ||||| ||||| | || |||
Sbjct 718 ATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTT 659
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | |||||
Sbjct 658 CCCGTAAGTGTCTTCACGAAAATCTGCAT 630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109149603233285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |