Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13659 161 2e-34 seq4612 145 2e-29 seq6368 129 1e-24 >seq13659 Length=5019 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| ||||| ||||| || | ||||| | |||||||| Sbjct 1117 ACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1176 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| ||||| || | ||||||||||| |||||||| |||||||||||||| Sbjct 1177 AACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 1236 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | || || || | |||| ||||||| Sbjct 1237 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTT 1296 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || ||||| || | |||||| Sbjct 1297 CCTGTCAATGTCTTTACAAAGATTTGCAT 1325 Score = 134 bits (148), Expect = 3e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || |||||| || | || |||||||| || || ||||| || | ||||| | ||||| Sbjct 885 CAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATC 944 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||||||| ||||| || | ||||||||||| |||||||| ||||||||||| Sbjct 945 TTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTC 1004 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || || || |||||||| || || | || || || | || | ||| Sbjct 1005 TTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGT 1064 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| || || || || | ||||||| Sbjct 1065 CTTACCAGTCAACGTCTTCACAAAGATTTGCATT 1098 >seq4612 Length=25615 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || |||||||| | ||||| | |||||||| Sbjct 15710 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCC 15651 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| ||||| || | ||||||||||| |||||||| |||||||||||||| Sbjct 15650 AACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 15591 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | || || || | || | |||||| Sbjct 15590 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTA 15531 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | ||||||| Sbjct 15530 CCAGTCAACGTCTTCACAAAGATTTGCATT 15501 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || || ||||| || | ||||| | |||||||| Sbjct 15482 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 15423 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| ||||| || | ||||||||||| |||||||| |||||||||||||| Sbjct 15422 AACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGG 15363 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || |||||||| || || | || || || | || | |||||| Sbjct 15362 ATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTA 15303 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || || || | ||||||| Sbjct 15302 CCAGTCAACGTCTTCACAAAGATTTGCATT 15273 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || |||||| || | || |||||||| || || |||||||| | ||||| | ||||| Sbjct 15942 CAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATC 15883 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||||||| ||||| || | ||||||||||| |||||||| ||||||||||| Sbjct 15882 TTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTC 15823 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || || || |||||||| || || | || || || | || | ||| Sbjct 15822 TTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGT 15763 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| || || || || | ||||||| Sbjct 15762 CTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729 >seq6368 Length=18664 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || || || || || ||||| || |||| |||||||| |||||||| Sbjct 838 ACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCC 779 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || || || || |||||||||||||| || ||||||||||| |||||| Sbjct 778 AGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGA 719 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || || || || | | || ||||| ||||| | || ||| Sbjct 718 ATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTT 659 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 658 CCCGTAAGTGTCTTCACGAAAATCTGCAT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109149603233285