Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq6368 138 7e-28
seq13659 91.5 1e-13
seq4612 86.0 4e-12
>seq6368
Length=18664
Score = 138 bits (152), Expect = 7e-28
Identities = 156/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833
|||| |||| ||| ||| ||||| || |||||||| ||||| ||||| |||| ||||
Sbjct 837 CAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCA 778
Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893
| ||||| || ||||| ||||| ||||| |||||| | || | || || || || ||
Sbjct 777 GTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAA 718
Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953
| ||| || || | | |||| | ||| | | |||||| || | |||||| |||||||
Sbjct 717 TTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTC 658
Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||| || |||||||| || ||||||||
Sbjct 657 CCGTAAGTGTCTTCACGAAAATCTGCAT 630
>seq13659
Length=5019
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/193 (71%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||||||||| ||||| || || | ||| |||| |||| ||| || || || |||
Sbjct 1135 TCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAT 1194
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||| ||||| | || | || || ||||| |||||| ||| || ||
Sbjct 1195 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCAC--AT 1252
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| | |||||| || | || || || ||||| || | ||||| |
Sbjct 1253 TCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTA 1312
Query 34969 CAAAGATCTGCAT 34981
||||||| |||||
Sbjct 1313 CAAAGATTTGCAT 1325
Score = 86.0 bits (94), Expect = 4e-12
Identities = 136/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||| ||||| || || | ||| |||| |||| ||| || || || |||
Sbjct 907 TCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAT 966
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||| ||||| | || | || || ||||| |||||| ||| || ||
Sbjct 967 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCAC--AT 1024
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| | |||||| || | || || || || || || | |||||||
Sbjct 1025 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 1084
Query 34969 CAAAGATCTGCAT 34981
||||||| |||||
Sbjct 1085 CAAAGATTTGCAT 1097
>seq4612
Length=25615
Score = 86.0 bits (94), Expect = 4e-12
Identities = 136/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||| ||||| || || | ||| |||| |||| ||| || || || |||
Sbjct 15464 TCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAT 15405
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||| ||||| | || | || || ||||| |||||| ||| || ||
Sbjct 15404 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCAC--AT 15347
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| | |||||| || | || || || || || || | |||||||
Sbjct 15346 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 15287
Query 34969 CAAAGATCTGCAT 34981
||||||| |||||
Sbjct 15286 CAAAGATTTGCAT 15274
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||| || || || || | ||| |||| |||| ||| || || || |||
Sbjct 15692 TCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAT 15633
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||| ||||| | || | || || ||||| |||||| ||| || ||
Sbjct 15632 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCAC--AT 15575
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| | |||||| || | || || || || || || | |||||||
Sbjct 15574 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 15515
Query 34969 CAAAGATCTGCAT 34981
||||||| |||||
Sbjct 15514 CAAAGATTTGCAT 15502
Score = 82.4 bits (90), Expect = 5e-11
Identities = 135/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||| || || || || | ||| |||| |||| ||| || || || |||
Sbjct 15920 TCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAAT 15861
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | ||||| ||||| | || | || || ||||| |||||| ||| || ||
Sbjct 15860 ATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCAC--AT 15803
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| || | |||| | |||||| || | || || || || || || | |||||||
Sbjct 15802 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 15743
Query 34969 CAAAGATCTGCAT 34981
||||||| |||||
Sbjct 15742 CAAAGATTTGCAT 15730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324541196596440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |