Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 266 4e-66
seq973 123 3e-23
>seq4326
Length=27076
Score = 266 bits (294), Expect = 4e-66
Identities = 602/903 (67%), Gaps = 44/903 (5%)
Strand=Plus/Plus
Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731
||||||||| |||||| || ||||| || || || ||||| || | ||||||| |||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 18732 CATAAAATCAAATGGATTTTT-------TACATT------------AT-------ATAtt 18765
|||||| ||||| ||||| | ||||| || | |||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 18766 t-------ttttGA-ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATG 18817
| |||| | | || | ||| | |||||| || || || | ||||| ||| ||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 18818 TGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATT 18877
||||| | ||||||||||| ||||| | || ||||| || |||| | ||| |
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 18878 CTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGT 18937
| |||||||| || |||||| ||| || || |||| | ||| || | ||| |
Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACG---TTCCTTGGAAGGCT 16277
Query 18938 AT---AGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTAC 18994
| | || ||||||||| | | ||| || ||||||||||||||||| ||||||||||
Sbjct 16278 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337
Query 18995 TTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATA 19054
| || |||||||| ||| | | |||||||| || |||| ||| || | ||||||||
Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397
Query 19055 TAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTT 19114
||| || || ||||||||||| | |||||| |||||||||||||||| || | ||
Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457
Query 19115 CTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTA 19174
|| || || ||| | || |||||| | | |||||| | |||||| ||| |
Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517
Query 19175 CACATGGCA--TTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAAC 19232
|||| | | ||| || ||| | || || ||| | | || | | ||||| |
Sbjct 16518 CACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575
Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292
|||| ||| || |||||| ||||||||| || |||||||| || ||||| ||||| |
Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635
Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352
|| ||||| || | | |||| ||||| ||||| | || | ||| | | ||
Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695
Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412
|| || ||||| ||||| || ||||| || ||||| || | || |||||
Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755
Query 19413 TTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAAC 19472
||| | | | | | ||||| | | |||||| || ||||| || ||||| ||
Sbjct 16756 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815
Query 19473 TGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGG 19532
|||||||||||||| | || || ||||| | | ||| | ||| | |||| ||| ||
Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875
Query 19533 AAA 19535
||
Sbjct 16876 GAA 16878
>seq973
Length=64032
Score = 123 bits (136), Expect = 3e-23
Identities = 263/387 (68%), Gaps = 7/387 (2%)
Strand=Plus/Plus
Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108
||||| |||||||||||||||| |||| ||| ||| | |||| | | ||| |
Sbjct 10266 CTCCAAGCATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGGGCGAGATGTAAG 10325
Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168
|||||||| || ||||| |||||||||| | | | | || |||||||| | ||| |
Sbjct 10326 TTAAGAGACTGGCTCTGGTCAATAAATGGGGCACGACCTGCAGCCATATCGATAATCTTC 10385
Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA---GATTA 47225
|||| | |||||||||||||| || || | |||| | || | || | ||
Sbjct 10386 TTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAACTCCTTAGGAATTCCATCG 10445
Query 47226 GTATTTTGAATAGATCCTCCgttttctataattttgttttttaa-ttcatttgaccaaag 47284
||| ||||||||| || | | || | | | | |||||| ||| | ||||| |
Sbjct 10446 ATATGTTGAATAGAACC-CTGATTCAAAACAATCGCTGTTTTAAGTTCGTCCGACCACAA 10504
Query 47285 ttttcgttcagttaatgtttttaa-AAGATGAGGATTAACAATTTGAAATTCTCCAGATA 47343
| || || ||| | | || ||||| ||||| |||||||| ||||| ||| ||
Sbjct 10505 CCCTAATTTAG-TAAGATCATCAAGAAGATATGGATTCACAATTTGGAATTCACCACTTA 10563
Query 47344 GTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAA 47403
|| | || | ||| || ||||| | ||||| |||| ||||| || |||| ||
Sbjct 10564 ACACGCGGCGAGAAAATACGTTGCTTGTGAAGGGTTCAGTAGACTCATTGTTCCCAAGAA 10623
Query 47404 TTTGAGCAGTTGATGCTGTAGGCATGG 47430
| |||| ||||||||||| |||||||
Sbjct 10624 TCTGAGATGTTGATGCTGTTGGCATGG 10650
Score = 109 bits (120), Expect = 6e-19
Identities = 176/253 (70%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471
||| |||||||||| ||||| ||||| | || || | ||| | | || |||
Sbjct 13385 CAAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTAT 13444
Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531
|| || || ||||| || || |||||||||| | ||||| ||| | ||||
Sbjct 13445 GAACATTTATTCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTAT 13504
Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591
| ||||| |||||||||||||| ||| ||||| | | ||||||||||| || | || |
Sbjct 13505 CGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTG 13564
Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651
| | |||||| | ||||| | ||| || || ||||| |||||||||| || || |
Sbjct 13565 GTTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 13624
Query 48652 ACAATTTATATGT 48664
|| ||||| ||
Sbjct 13625 TCAGGTTATACGT 13637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561944699362200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |