Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4326 266 4e-66 seq973 123 3e-23 >seq4326 Length=27076 Score = 266 bits (294), Expect = 4e-66 Identities = 602/903 (67%), Gaps = 44/903 (5%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||||||||| |||||| || ||||| || || || ||||| || | ||||||| ||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 18732 CATAAAATCAAATGGATTTTT-------TACATT------------AT-------ATAtt 18765 |||||| ||||| ||||| | ||||| || | ||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 18766 t-------ttttGA-ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATG 18817 | |||| | | || | ||| | |||||| || || || | ||||| ||| || Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 18818 TGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATT 18877 ||||| | ||||||||||| ||||| | || ||||| || |||| | ||| | Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 18878 CTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGT 18937 | |||||||| || |||||| ||| || || |||| | ||| || | ||| | Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACG---TTCCTTGGAAGGCT 16277 Query 18938 AT---AGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTAC 18994 | | || ||||||||| | | ||| || ||||||||||||||||| |||||||||| Sbjct 16278 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337 Query 18995 TTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATA 19054 | || |||||||| ||| | | |||||||| || |||| ||| || | |||||||| Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397 Query 19055 TAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTT 19114 ||| || || ||||||||||| | |||||| |||||||||||||||| || | || Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457 Query 19115 CTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTA 19174 || || || ||| | || |||||| | | |||||| | |||||| ||| | Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517 Query 19175 CACATGGCA--TTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAAC 19232 |||| | | ||| || ||| | || || ||| | | || | | ||||| | Sbjct 16518 CACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575 Query 19233 ATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAA 19292 |||| ||| || |||||| ||||||||| || |||||||| || ||||| ||||| | Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635 Query 19293 TCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT 19352 || ||||| || | | |||| ||||| ||||| | || | ||| | | || Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695 Query 19353 TTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTT 19412 || || ||||| ||||| || ||||| || ||||| || | || ||||| Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755 Query 19413 TTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAAC 19472 ||| | | | | | ||||| | | |||||| || ||||| || ||||| || Sbjct 16756 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815 Query 19473 TGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGG 19532 |||||||||||||| | || || ||||| | | ||| | ||| | |||| ||| || Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875 Query 19533 AAA 19535 || Sbjct 16876 GAA 16878 >seq973 Length=64032 Score = 123 bits (136), Expect = 3e-23 Identities = 263/387 (68%), Gaps = 7/387 (2%) Strand=Plus/Plus Query 47049 CTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATA 47108 ||||| |||||||||||||||| |||| ||| ||| | |||| | | ||| | Sbjct 10266 CTCCAAGCATAGAAATGCATACTTGTTATTTTTCCATAGTTCGGTTGGGCGAGATGTAAG 10325 Query 47109 TTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACC 47168 |||||||| || ||||| |||||||||| | | | | || |||||||| | ||| | Sbjct 10326 TTAAGAGACTGGCTCTGGTCAATAAATGGGGCACGACCTGCAGCCATATCGATAATCTTC 10385 Query 47169 CTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA---GATTA 47225 |||| | |||||||||||||| || || | |||| | || | || | || Sbjct 10386 TTTTGCGAAATCTCCCATACTGTCTTGTACAAAGGTTTTAACTCCTTAGGAATTCCATCG 10445 Query 47226 GTATTTTGAATAGATCCTCCgttttctataattttgttttttaa-ttcatttgaccaaag 47284 ||| ||||||||| || | | || | | | | |||||| ||| | ||||| | Sbjct 10446 ATATGTTGAATAGAACC-CTGATTCAAAACAATCGCTGTTTTAAGTTCGTCCGACCACAA 10504 Query 47285 ttttcgttcagttaatgtttttaa-AAGATGAGGATTAACAATTTGAAATTCTCCAGATA 47343 | || || ||| | | || ||||| ||||| |||||||| ||||| ||| || Sbjct 10505 CCCTAATTTAG-TAAGATCATCAAGAAGATATGGATTCACAATTTGGAATTCACCACTTA 10563 Query 47344 GTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAA 47403 || | || | ||| || ||||| | ||||| |||| ||||| || |||| || Sbjct 10564 ACACGCGGCGAGAAAATACGTTGCTTGTGAAGGGTTCAGTAGACTCATTGTTCCCAAGAA 10623 Query 47404 TTTGAGCAGTTGATGCTGTAGGCATGG 47430 | |||| ||||||||||| ||||||| Sbjct 10624 TCTGAGATGTTGATGCTGTTGGCATGG 10650 Score = 109 bits (120), Expect = 6e-19 Identities = 176/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471 ||| |||||||||| ||||| ||||| | || || | ||| | | || ||| Sbjct 13385 CAAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTAT 13444 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || || || ||||| || || |||||||||| | ||||| ||| | |||| Sbjct 13445 GAACATTTATTCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTAT 13504 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 | ||||| |||||||||||||| ||| ||||| | | ||||||||||| || | || | Sbjct 13505 CGTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTG 13564 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 | | |||||| | ||||| | ||| || || ||||| |||||||||| || || | Sbjct 13565 GTTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACA 13624 Query 48652 ACAATTTATATGT 48664 || ||||| || Sbjct 13625 TCAGGTTATACGT 13637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561944699362200