Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2131 212 5e-49 seq5398 156 3e-32 seq6368 145 6e-29 seq4772 102 7e-16 seq4612 89.7 4e-12 >seq2131 Length=43850 Score = 212 bits (234), Expect = 5e-49 Identities = 411/599 (69%), Gaps = 11/599 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||| | || || |||||| ||||||||||||| || |||| ||| Sbjct 41771 GCCATTGGGATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGCAAA 41830 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||||||||| ||||||||||| || || |||||| | ||||| Sbjct 41831 GTGGAGATAATTGCCAATGATCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 41890 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || |||| | |||| ||||||||| |||||| | |||| || |||||| || ||| Sbjct 41891 GATGCTGAGCGTTTAATTGGTGATGGAGCAAAGAACCAAGTGGCTATTAATCCAACAAAT 41950 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || || |||| || | ||||| ||||| | | |||||| Sbjct 41951 ACAGTGTTTGATGCGAAGCGGCTAATCGGTCGTCGTTTTGATGATCCATCAGTTCAGAGT 42010 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||||||||| || | | ||| | || ||| || | | ||| | | Sbjct 42011 GATATGAAGCATTGGCCATTTGAGGTGGTTCAAGTCGGTGGTAAGCTGAAGATTCGTGTT 42070 Query 550292 ACTCATGAAGGATCTGTTAAACAATT-TTCAC--CAGAACAAATTTCATCTATGGTTTTA 550348 || |||| || ||| | || ||| | | || | ||||| || ||||| || Sbjct 42071 GAGTAT-AAGG--GTGAGAAAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTG 42127 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAAT 550407 | |||||||| | | | | || |||| || || ||| | || || || || Sbjct 42128 ACAAAAATGAAGGAGGTTG-CTGAAAGTTATTTGGGCAGGACAGTGAGTGACGCGGTTAT 42186 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 ||| || || || || || |||||| ||||||||||| || |||||||| || ||| Sbjct 42187 AACAGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTAT 42246 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||| |||||||| | | || || ||||| || || ||||| ||| |||| ||||| Sbjct 42247 AGCTGGTCTTAATGTGTTGAGAATCATTAATGAGCCGACGGCTGCGGCAATTGCCTATGG 42306 Query 550528 ACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583 | || || | || | || | |||||| | || ||||||| |||| |||| Sbjct 42307 TTTAGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTA 42365 >seq5398 Length=21971 Score = 156 bits (172), Expect = 3e-32 Identities = 376/563 (67%), Gaps = 12/563 (2%) Strand=Plus/Minus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 |||||||||| | ||| || |||||| |||||||| |||||||| |||||||| | Sbjct 6759 GTGTTGGTGTATTTCAAGGAGGCCGAGTTGAGATTATTGCGAATGATCAGGGTAACAGGA 6700 Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 |||||| || ||||| | ||||| |||| || | |||| |||| ||||| || | Sbjct 6699 TTACTCCCTCATATGTAGCATTCACTCCGGAAGGCGAGCGTTTAATTGGGGATGCTGCTA 6640 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || | || || ||||| || || ||||| || | || | | || || | Sbjct 6639 AAAACCAGCTGACATCAAATCCGGAAAACACAATTTTCGACGTCAAGAGACTTATCGGCA 6580 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 | | || |||| || ||||| || || || | || | ||||| |||||| Sbjct 6579 GGAAATTCGATGAATCAACTGTGCAAAATGACATAACTCACTACCCTTTTTCCGTTGTTA 6520 Query 550263 ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGT--TAAACAATTTT- 550319 || ||||| ||||| |||| || | | ||||| | | || | ||| Sbjct 6519 ATAAAAAGAACAAACCATATATCGAAGTTA---ACGTTGGATCAGAAGTCAAGACGTTTG 6463 Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 | ||||| | || || ||||||| ||| ||| |||||| | || | | | Sbjct 6462 CCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATC 6403 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 ||||| || | || || |||||||| | ||||| ||||| ||||| || || |||||| Sbjct 6402 TTGGTAAAAAGGTAACCCATGCAGTAGTCACTGTCCCAGCCTATTTCAACGATGCACAAC 6343 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | || || || ||||||||||| |||||||| | ||| | |||| || || |||| Sbjct 6342 GCCAGGCAACCAAAGATGCTGGCACAATTGCTGGTTTGAATATAATTCGGATCATTAATG 6283 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATG 550559 |||| ||||||||||| |||| || || || ||||| | ||| | |||| ||| Sbjct 6282 AACCAACTGCTGCTGCGATTGCTTACGGTCTAGATAAGAAAGATGGT-GAGAA--GAATA 6226 Query 550560 TACTCATCTTTGATTGTGGAGGT 550582 | || || |||||| ||||||| Sbjct 6225 TTCTGATATTTGATCTTGGAGGT 6203 >seq6368 Length=18664 Score = 145 bits (160), Expect = 6e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||||||||| || ||| || ||||| || || | ||||||| | Sbjct 847 AGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGT 788 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| |||||||| || |||||||| || | ||| || || || || || |||||| Sbjct 787 CCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCT 728 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 |||||||||||||| || ||||| || |||||||||| | | ||| || || Sbjct 727 TTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTT 668 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | |||||| || ||||| || || |||||||| ||||| Sbjct 667 ATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630 >seq4772 Length=24863 Score = 102 bits (112), Expect = 7e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 368557 TTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGA 368616 |||| ||||||||| | || || ||||||| | | || |||| | | || ||||| Sbjct 19368 TTTGCTAATTGGCTACGTGATGCACGTGATTGGGCTGTGTCTAGAAATCGTTTCTGGGGT 19427 Query 368617 ACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGTTCAATT 368676 || ||||| ||| |||||| | ||||||| |||||| | |||||| | ||||| ||| Sbjct 19428 ACACCAATACCAATATGGACAAGTGATGATATGGAAGAAGTGGTTTGTGTTGGTTCCATT 19487 Query 368677 AAAGAATTGCAAGAATTATCTGGTGT 368702 |||||||| || |||||||||||| Sbjct 19488 GAAGAATTGAAACTATTATCTGGTGT 19513 >seq4612 Length=25615 Score = 89.7 bits (98), Expect = 4e-12 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || |||||||| || || ||| | | ||| || |||||||||| ||||| | Sbjct 15719 AGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGG--ATGTTGTAATCAGACAGAGTAC 15662 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | || || || || || || | | ||| || ||||||||||| |||| Sbjct 15661 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 15602 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 |||| ||||| || || ||| || |||||| |||||| | | | || | | Sbjct 15601 CTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACG 15542 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || |||||||| | || || || || |||||||| Sbjct 15541 TGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15502 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 ||||| || |||||||| || || ||| | | ||| || ||||| |||| ||||| | Sbjct 15491 AGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGG--ATGTTGTAGTCAGACAGAGTAC 15434 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | || || || || || || | | ||| || ||||||||||| |||| Sbjct 15433 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 15374 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 |||| ||||| || || ||| || |||||| |||||| | | | || | | Sbjct 15373 CTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACG 15314 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || |||||||| | || || || || |||||||| Sbjct 15313 TGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15274 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/220 (69%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || || || |||||||| | ||| ||| | | ||| || |||||||||| ||||| | Sbjct 15947 AGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGG--ATGTTGTAATCAGACAGAGTAC 15890 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 | |||||| | || || || || || || | | ||| || ||||||||||| |||| Sbjct 15889 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 15830 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 |||| ||||| || || ||| || |||||| |||||| | | | || | | Sbjct 15829 CTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACG 15770 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || |||||||| | || || || || |||||||| Sbjct 15769 TGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028060882268950