Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq2131 212 5e-49
seq5398 156 3e-32
seq6368 145 6e-29
seq4772 102 7e-16
seq4612 89.7 4e-12
>seq2131
Length=43850
Score = 212 bits (234), Expect = 5e-49
Identities = 411/599 (69%), Gaps = 11/599 (2%)
Strand=Plus/Plus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| || || || ||| | || || |||||| ||||||||||||| || |||| |||
Sbjct 41771 GCCATTGGGATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGCAAA 41830
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|| || || |||||||||||||| ||||||||||| || || |||||| | |||||
Sbjct 41831 GTGGAGATAATTGCCAATGATCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 41890
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| |||| | |||| ||||||||| |||||| | |||| || |||||| || |||
Sbjct 41891 GATGCTGAGCGTTTAATTGGTGATGGAGCAAAGAACCAAGTGGCTATTAATCCAACAAAT 41950
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| | |||||||| || || |||| || | ||||| ||||| | | ||||||
Sbjct 41951 ACAGTGTTTGATGCGAAGCGGCTAATCGGTCGTCGTTTTGATGATCCATCAGTTCAGAGT 42010
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
||||||||||||||||| || | | ||| | || ||| || | | ||| | |
Sbjct 42011 GATATGAAGCATTGGCCATTTGAGGTGGTTCAAGTCGGTGGTAAGCTGAAGATTCGTGTT 42070
Query 550292 ACTCATGAAGGATCTGTTAAACAATT-TTCAC--CAGAACAAATTTCATCTATGGTTTTA 550348
|| |||| || ||| | || ||| | | || | ||||| || ||||| ||
Sbjct 42071 GAGTAT-AAGG--GTGAGAAAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTG 42127
Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAAT 550407
| |||||||| | | | | || |||| || || ||| | || || || ||
Sbjct 42128 ACAAAAATGAAGGAGGTTG-CTGAAAGTTATTTGGGCAGGACAGTGAGTGACGCGGTTAT 42186
Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467
||| || || || || || |||||| ||||||||||| || |||||||| || |||
Sbjct 42187 AACAGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGCTAT 42246
Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527
||||| |||||||| | | || || ||||| || || ||||| ||| |||| |||||
Sbjct 42247 AGCTGGTCTTAATGTGTTGAGAATCATTAATGAGCCGACGGCTGCGGCAATTGCCTATGG 42306
Query 550528 ACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATT---GTGGAGGTA 550583
| || || | || | || | |||||| | || ||||||| |||| ||||
Sbjct 42307 TTTAGACAAGAAGGTTGGTGGTGAGCGTAATGTGTTGATATTTGATTTGGGTGGTGGTA 42365
>seq5398
Length=21971
Score = 156 bits (172), Expect = 3e-32
Identities = 376/563 (67%), Gaps = 12/563 (2%)
Strand=Plus/Minus
Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085
|||||||||| | ||| || |||||| |||||||| |||||||| |||||||| |
Sbjct 6759 GTGTTGGTGTATTTCAAGGAGGCCGAGTTGAGATTATTGCGAATGATCAGGGTAACAGGA 6700
Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142
|||||| || ||||| | ||||| |||| || | |||| |||| ||||| || |
Sbjct 6699 TTACTCCCTCATATGTAGCATTCACTCCGGAAGGCGAGCGTTTAATTGGGGATGCTGCTA 6640
Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202
|| | || || ||||| || || ||||| || | || | | || || |
Sbjct 6639 AAAACCAGCTGACATCAAATCCGGAAAACACAATTTTCGACGTCAAGAGACTTATCGGCA 6580
Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262
| | || |||| || ||||| || || || | || | ||||| ||||||
Sbjct 6579 GGAAATTCGATGAATCAACTGTGCAAAATGACATAACTCACTACCCTTTTTCCGTTGTTA 6520
Query 550263 ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGT--TAAACAATTTT- 550319
|| ||||| ||||| |||| || | | ||||| | | || | |||
Sbjct 6519 ATAAAAAGAACAAACCATATATCGAAGTTA---ACGTTGGATCAGAAGTCAAGACGTTTG 6463
Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379
| ||||| | || || ||||||| ||| ||| |||||| | || | | |
Sbjct 6462 CCCCAGAGGAGATCTCTGCTATGGTGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATC 6403
Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439
||||| || | || || |||||||| | ||||| ||||| ||||| || || ||||||
Sbjct 6402 TTGGTAAAAAGGTAACCCATGCAGTAGTCACTGTCCCAGCCTATTTCAACGATGCACAAC 6343
Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499
| || || || ||||||||||| |||||||| | ||| | |||| || || ||||
Sbjct 6342 GCCAGGCAACCAAAGATGCTGGCACAATTGCTGGTTTGAATATAATTCGGATCATTAATG 6283
Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGAACTTAATG 550559
|||| ||||||||||| |||| || || || ||||| | ||| | |||| |||
Sbjct 6282 AACCAACTGCTGCTGCGATTGCTTACGGTCTAGATAAGAAAGATGGT-GAGAA--GAATA 6226
Query 550560 TACTCATCTTTGATTGTGGAGGT 550582
| || || |||||| |||||||
Sbjct 6225 TTCTGATATTTGATCTTGGAGGT 6203
>seq6368
Length=18664
Score = 145 bits (160), Expect = 6e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316
|||||||| ||||||||||| || ||| || ||||| || || | ||||||| |
Sbjct 847 AGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGT 788
Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376
|||||| |||||||| || |||||||| || | ||| || || || || || ||||||
Sbjct 787 CCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCT 728
Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436
|||||||||||||| || ||||| || |||||||||| | | ||| || ||
Sbjct 727 TTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTT 668
Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| |||||| || ||||| || || |||||||| |||||
Sbjct 667 ATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630
>seq4772
Length=24863
Score = 102 bits (112), Expect = 7e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 368557 TTTGATAATTGGCTCCAAAATTCAGTTGATTGGTGTATTTCAAGAAGTAGGTTTTGGGGA 368616
|||| ||||||||| | || || ||||||| | | || |||| | | || |||||
Sbjct 19368 TTTGCTAATTGGCTACGTGATGCACGTGATTGGGCTGTGTCTAGAAATCGTTTCTGGGGT 19427
Query 368617 ACTCCAATTCCAGTATGGAAATCTGATGATGGTGAAGAAATTGTTTGTATAGGTTCAATT 368676
|| ||||| ||| |||||| | ||||||| |||||| | |||||| | ||||| |||
Sbjct 19428 ACACCAATACCAATATGGACAAGTGATGATATGGAAGAAGTGGTTTGTGTTGGTTCCATT 19487
Query 368677 AAAGAATTGCAAGAATTATCTGGTGT 368702
|||||||| || ||||||||||||
Sbjct 19488 GAAGAATTGAAACTATTATCTGGTGT 19513
>seq4612
Length=25615
Score = 89.7 bits (98), Expect = 4e-12
Identities = 153/220 (70%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
||||| || |||||||| || || ||| | | ||| || |||||||||| ||||| |
Sbjct 15719 AGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGG--ATGTTGTAATCAGACAGAGTAC 15662
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
| |||||| | || || || || || || | | ||| || ||||||||||| ||||
Sbjct 15661 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 15602
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434
|||| ||||| || || ||| || |||||| |||||| | | | || | |
Sbjct 15601 CTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACG 15542
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | || |||||||| | || || || || ||||||||
Sbjct 15541 TGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15502
Score = 86.0 bits (94), Expect = 5e-11
Identities = 152/220 (69%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
||||| || |||||||| || || ||| | | ||| || ||||| |||| ||||| |
Sbjct 15491 AGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGG--ATGTTGTAGTCAGACAGAGTAC 15434
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
| |||||| | || || || || || || | | ||| || ||||||||||| ||||
Sbjct 15433 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 15374
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434
|||| ||||| || || ||| || |||||| |||||| | | | || | |
Sbjct 15373 CTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACG 15314
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | || |||||||| | || || || || ||||||||
Sbjct 15313 TGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15274
Score = 86.0 bits (94), Expect = 5e-11
Identities = 152/220 (69%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|| || || |||||||| | ||| ||| | | ||| || |||||||||| ||||| |
Sbjct 15947 AGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGG--ATGTTGTAATCAGACAGAGTAC 15890
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
| |||||| | || || || || || || | | ||| || ||||||||||| ||||
Sbjct 15889 GTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTT 15830
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434
|||| ||||| || || ||| || |||||| |||||| | | | || | |
Sbjct 15829 CTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACG 15770
Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
| | || |||||||| | || || || || ||||||||
Sbjct 15769 TGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028060882268950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |