Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4326 268 1e-66 seq14164 82.4 9e-11 >seq4326 Length=27076 Score = 268 bits (296), Expect = 1e-66 Identities = 574/853 (67%), Gaps = 50/853 (6%) Strand=Plus/Plus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||||||||| |||||||| | || ||||| |||||||||||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 36947 CATAAAATCAAATGGATTAGATGTATTATATAT----------AGTACTACATGATAATT 36996 |||||| ||||| ||||| | || ||| || | | || | || |||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 36997 -----------------CC---TTCA----GAAGCCTATCCGCAACAAATTCTATGTATT 37032 || |||| | ||||| || || | |||||| ||||| | Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 37033 TACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATA 37092 |||||| |||| | || || ||||||| | ||||| | || ||| | ||| Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 37093 GTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGAT 37152 | |||||||| || || ||| | | ||| ||| | ||| | | | || | Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCT---TGGAAGGCT 16277 Query 37153 ATTTTA-AATAT--TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTAC 37209 ||| | ||||| ||||| |||| ||| || ||||||||||||| ||||| ||||||| Sbjct 16278 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337 Query 37210 TTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATA 37269 | || |||||||| ||| | | ||| ||||| | ||||| ||| |||| ||| |||| Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397 Query 37270 TTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG 37329 | ||||| || ||||||||||||| |||||| ||||||||||| || | | |||| Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457 Query 37330 TACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA 37389 | ||||| || | |||| |||||| | | || ||| | |||||| | || Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517 Query 37390 CACA--TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTAT 37447 |||| || | ||| || || || || |||||||||| |||||| ||| | || Sbjct 16518 CACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575 Query 37448 ATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAA 37507 || |||||||||| |||| |||||||||||||||||||| || ||||||||||| | Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635 Query 37508 ACCATAAAAACACCTAGCTTCAGATAATTGAACATCGT-TAAAAAACCTCTTAGCTAAGT 37566 |||||||| || | | | || | | || || || | || | | ||| | || Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAG-GAGGT 16694 Query 37567 TTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTC 37626 | || || || || ||||| || ||||||||||| | || || ||| ||||| | Sbjct 16695 TCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGAC 16754 Query 37627 TTTCATCA--TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 37684 ||| || ||| | | ||||| | | |||||| || ||||| || || || Sbjct 16755 GTTCCCCAACCTTG--AGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTC 16812 Query 37685 AACGGTCCAAAAA 37697 || ||||||||| Sbjct 16813 CACAGTCCAAAAA 16825 >seq14164 Length=4548 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| ||||| |||||||| || ||| |||||||| ||| ||| ||| | || || || Sbjct 2246 AGGAGTTTTGCATACAAAGTTATGGTCAGTTGATACCAAAAATGGTTATGTGGGTAGCGC 2187 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGT 153376 |||||||| |||||||||||||| ||||| Sbjct 2186 AAATATGGACTGGAGATCACTAACACAAGT 2157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592143880514200