Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 268 1e-66
seq14164 82.4 9e-11
>seq4326
Length=27076
Score = 268 bits (296), Expect = 1e-66
Identities = 574/853 (67%), Gaps = 50/853 (6%)
Strand=Plus/Plus
Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946
||||||||| |||||||| | || ||||| |||||||||||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 36947 CATAAAATCAAATGGATTAGATGTATTATATAT----------AGTACTACATGATAATT 36996
|||||| ||||| ||||| | || ||| || | | || | || ||||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 36997 -----------------CC---TTCA----GAAGCCTATCCGCAACAAATTCTATGTATT 37032
|| |||| | ||||| || || | |||||| ||||| |
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 37033 TACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATA 37092
|||||| |||| | || || ||||||| | ||||| | || ||| | |||
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 37093 GTTTTTCTATTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGAT 37152
| |||||||| || || ||| | | ||| ||| | ||| | | | || |
Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCT---TGGAAGGCT 16277
Query 37153 ATTTTA-AATAT--TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTAC 37209
||| | ||||| ||||| |||| ||| || ||||||||||||| ||||| |||||||
Sbjct 16278 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337
Query 37210 TTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATA 37269
| || |||||||| ||| | | ||| ||||| | ||||| ||| |||| ||| ||||
Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397
Query 37270 TTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTG 37329
| ||||| || ||||||||||||| |||||| ||||||||||| || | | ||||
Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457
Query 37330 TACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA 37389
| ||||| || | |||| |||||| | | || ||| | |||||| | ||
Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 16517
Query 37390 CACA--TTCAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTAT 37447
|||| || | ||| || || || || |||||||||| |||||| ||| | ||
Sbjct 16518 CACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575
Query 37448 ATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAA 37507
|| |||||||||| |||| |||||||||||||||||||| || ||||||||||| |
Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635
Query 37508 ACCATAAAAACACCTAGCTTCAGATAATTGAACATCGT-TAAAAAACCTCTTAGCTAAGT 37566
|||||||| || | | | || | | || || || | || | | ||| | ||
Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAG-GAGGT 16694
Query 37567 TTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTC 37626
| || || || || ||||| || ||||||||||| | || || ||| ||||| |
Sbjct 16695 TCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGAC 16754
Query 37627 TTTCATCA--TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 37684
||| || ||| | | ||||| | | |||||| || ||||| || || ||
Sbjct 16755 GTTCCCCAACCTTG--AGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTC 16812
Query 37685 AACGGTCCAAAAA 37697
|| |||||||||
Sbjct 16813 CACAGTCCAAAAA 16825
>seq14164
Length=4548
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346
||| ||||| |||||||| || ||| |||||||| ||| ||| ||| | || || ||
Sbjct 2246 AGGAGTTTTGCATACAAAGTTATGGTCAGTTGATACCAAAAATGGTTATGTGGGTAGCGC 2187
Query 153347 TAATATGGATTGGAGATCACTAACTCAAGT 153376
|||||||| |||||||||||||| |||||
Sbjct 2186 AAATATGGACTGGAGATCACTAACACAAGT 2157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592143880514200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |