Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq13659 114 1e-20 seq4612 100 2e-16 >seq13659 Length=5019 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| ||||| ||||| ||| | || | || |||||||||||||| || || Sbjct 1134 CTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 1193 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| || ||||| || | |||| || || ||||| ||||| ||| ||| Sbjct 1194 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 1253 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | ||| ||||||| ||||||||| ||||| ||||| || ||||| Sbjct 1254 CTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTAC 1313 Query 48755 AAAAATCTGCATC 48767 ||| || |||||| Sbjct 1314 AAAGATTTGCATC 1326 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| |||| || | ||||| || |||||| || || ||||| ||||| Sbjct 870 GCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 929 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||||||||||||| || ||||||| || ||||| || | || Sbjct 930 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 989 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || || ||||| ||||| ||| ||| | | || || | ||| || Sbjct 990 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAAC 1049 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||| ||||| || || ||||| || || ||||| || ||||| Sbjct 1050 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097 >seq4612 Length=25615 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || | ||| |||| || | ||||| || |||||| || || ||||||||||| Sbjct 15957 GCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGA 15898 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||||||||||||| || ||||||| || ||||| || | || Sbjct 15897 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 15838 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || || || ||||| ||||| ||| ||| | | || || | ||| || Sbjct 15837 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAAC 15778 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | ||| ||||| || || ||||| || || ||||| || ||||| Sbjct 15777 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || ||||||||||| ||| | || | || |||||||||||||| || || Sbjct 15693 CTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15634 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| || ||||| || | |||| || || ||||| ||||| ||| ||| Sbjct 15633 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 15574 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | ||| ||||| | ||| ||||| || || ||||| || || || Sbjct 15573 CTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCAC 15514 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 15513 AAAGATTTGCAT 15502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| || || ||||| ||||| ||| | || | || |||||||||||||| || || Sbjct 15465 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15406 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| || ||||| || | |||| || || ||||| ||||| ||| ||| Sbjct 15405 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 15346 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | ||| ||||| | ||| ||||| || || ||||| || || || Sbjct 15345 CTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCAC 15286 Query 48755 AAAAATCTGCAT 48766 ||| || ||||| Sbjct 15285 AAAGATTTGCAT 15274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380829170278665