Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq13659 114 1e-20
seq4612 100 2e-16
>seq13659
Length=5019
Score = 114 bits (126), Expect = 1e-20
Identities = 141/193 (73%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| ||||| ||||| ||||| ||| | || | || |||||||||||||| || ||
Sbjct 1134 CTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 1193
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
||||| || ||||| || | |||| || || ||||| ||||| ||| |||
Sbjct 1194 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 1253
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | || || | ||| ||||||| ||||||||| ||||| ||||| || |||||
Sbjct 1254 CTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTAC 1313
Query 48755 AAAAATCTGCATC 48767
||| || ||||||
Sbjct 1314 AAAGATTTGCATC 1326
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| || | ||| |||| || | ||||| || |||||| || || ||||| |||||
Sbjct 870 GCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGA 929
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||||||||||||| || ||||||| || ||||| || | ||
Sbjct 930 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 989
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| || || ||||| ||||| ||| ||| | | || || | ||| ||
Sbjct 990 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAAC 1049
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | ||| ||||| || || ||||| || || ||||| || |||||
Sbjct 1050 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097
>seq4612
Length=25615
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| || | ||| |||| || | ||||| || |||||| || || |||||||||||
Sbjct 15957 GCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGA 15898
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||||||||||||| || ||||||| || ||||| || | ||
Sbjct 15897 CAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 15838
Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718
|| || || ||||| ||||| ||| ||| | | || || | ||| ||
Sbjct 15837 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAAC 15778
Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||| | ||| ||||| || || ||||| || || ||||| || |||||
Sbjct 15777 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730
Score = 95.1 bits (104), Expect = 9e-15
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| || || ||||||||||| ||| | || | || |||||||||||||| || ||
Sbjct 15693 CTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15634
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
||||| || ||||| || | |||| || || ||||| ||||| ||| |||
Sbjct 15633 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 15574
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | || || | ||| ||||| | ||| ||||| || || ||||| || || ||
Sbjct 15573 CTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCAC 15514
Query 48755 AAAAATCTGCAT 48766
||| || |||||
Sbjct 15513 AAAGATTTGCAT 15502
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| || || ||||| ||||| ||| | || | || |||||||||||||| || ||
Sbjct 15465 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15406
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
||||| || ||||| || | |||| || || ||||| ||||| ||| |||
Sbjct 15405 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATT 15346
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | || || | ||| ||||| | ||| ||||| || || ||||| || || ||
Sbjct 15345 CTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCAC 15286
Query 48755 AAAAATCTGCAT 48766
||| || |||||
Sbjct 15285 AAAGATTTGCAT 15274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380829170278665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |