Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2131 188 5e-42 seq5398 187 2e-41 seq6368 152 3e-31 seq13659 111 1e-18 seq4612 107 1e-17 >seq2131 Length=43850 Score = 188 bits (208), Expect = 5e-42 Identities = 378/555 (68%), Gaps = 14/555 (3%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || ||||| || ||| | || || || || ||||| | ||||| || |||| ||| Sbjct 41771 GCCATTGGGATCGATCTTGGTACAACATATTCGTGTGTTGGTGTTTTCCAGCATGGCAAA 41830 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || |||||||||||||| || ||||| ||||| ||||| ||||| | || || Sbjct 41831 GTGGAGATAATTGCCAATGATCAGGGTAACAGAACGACACCGAGTTATGTGGCGTTCACA 41890 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || |||| | | | ||||| |||| || || | |||| || |||||| ||| Sbjct 41891 GATGCTGAGCGTTTAATTGGTGATGGAGCAAAGAACCAAGTGGCTATTAATCCAACAAAT 41950 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | |||||||| || | | || |||||| |||||||||| | | || || | Sbjct 41951 ACAGTGTTTGATGCGAAGCGGCTAATCGGTCGTCGTTTTGATGATCCATCAGTTCAGAGT 42010 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG-- 474626 |||||| |||||||| ||| ||||| | | || |||||||| | | || | Sbjct 42011 GATATGAAGCATTGGCCATTTGAGGTGGTTCAAGTCGGTGGTAAGCTGAAGATTCGTGTT 42070 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | || | | ||||| | || || || |||| | ||||| || ||||| || Sbjct 42071 GAGTATAAG--GGTGAGAAAAAGTTGTTCTCCGCGGAGGAGATTTCGTCGATGGTGTTGA 42128 Query 474687 CCAAAATGAAACAAACCGCGAGCTCA----TATCTTGGACAAGA-AGTAACTGATGCAGT 474741 | |||||||| | | ||| | ||| |||| || || ||| | ||| || || Sbjct 42129 CAAAAATGAAGGA----GGTTGCTGAAAGTTAT-TTGGGCAGGACAGTGAGTGACGCGGT 42183 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || ||||| ||||||||||||||| |||||||| || Sbjct 42184 TATAACAGTTCCTGCTTACTTCAATGACAGTCAACGTCAAGCAACGAAAGATGCAGGTGC 42243 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || ||||||||||| || | || |||||||| || || || || ||| |||| || Sbjct 42244 TATAGCTGGTCTTAATGTGTTGAGAATCATTAATGAGCCGACGGCTGCGGCAATTGCCTA 42303 Query 474862 TGGTCTTGATAAGAA 474876 |||| | || ||||| Sbjct 42304 TGGTTTAGACAAGAA 42318 >seq5398 Length=21971 Score = 187 bits (206), Expect = 2e-41 Identities = 371/539 (69%), Gaps = 14/539 (3%) Strand=Plus/Minus Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || || ||||| ||||| || ||||| || | || || |||||||| | || || Sbjct 6734 AGTTGAGATTATTGCGAATGATCAGGGTAACAGGATTACTCCCTCATATGTAGCATTCAC 6675 Query 474448 T---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTG 474503 | ||| || | | | ||||| |||||||||||| | || |||| |||| ||||| | Sbjct 6674 TCCGGAAGGCGAGCGTTTAATTGGGGATGCTGCTAAAAACCA-GCTGACATCAAATCCGG 6616 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || ||||| || | || ||| | || || | || || ||||| | ||||| | Sbjct 6615 AAAACACAATTTTCGACGTCAAGAGACTTATCGGCAGGAAATTCGATGAATCAACTGTGC 6556 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAG 474623 || ||| || ||| | |||||| || | ||| ||||||||||| | Sbjct 6555 AAAATGACATAACTCACTACCCTTTTTCCGTTGTTAATAAAAAGAACAAACCATATATCG 6496 Query 474624 AAGCAATACACGCAGG-TGA-AACTAAACAATTTT-CACCGGAACAAATTTCTTCAATGG 474680 ||| | ||| || | | || | || | ||| | || || | || ||| | |||| Sbjct 6495 AAGTTA---ACGTTGGATCAGAAGTCAAGACGTTTGCCCCAGAGGAGATCTCTGCTATGG 6439 Query 474681 TTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | |||| || |||||| | || || |||||||| || | ||||| |||||| Sbjct 6438 TGTTAGGGAAGATGAAAGAGTTTGCTGAATCCTATCTTGGTAAAAAGGTAACCCATGCAG 6379 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 || | ||||| ||||| ||||| || ||| | ||||| || ||||| |||||||| || | Sbjct 6378 TAGTCACTGTCCCAGCCTATTTCAACGATGCACAACGCCAGGCAACCAAAGATGCTGGCA 6319 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 |||||| ||| | ||| | | || || |||||||||||||| || || || |||||| Sbjct 6318 CAATTGCTGGTTTGAATATAATTCGGATCATTAATGAACCAACTGCTGCTGCGATTGCTT 6259 Query 474861 ATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | ||||| |||||||| || ||||| ||| || | || |||||| ||||||| Sbjct 6258 ACGGTCTAGATAAGAAAGATG-GTGAGAAG--AATATTCTGATATTTGATCTTGGAGGT 6203 >seq6368 Length=18664 Score = 152 bits (168), Expect = 3e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| |||||||||||||| ||| || | |||||| || | ||||| Sbjct 851 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 792 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || |||||| ||||| || ||||||||||| ||||||||||| || || || || || Sbjct 791 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 732 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| || |||||||| || || || ||||| || ||||||| | | ||| || Sbjct 731 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 672 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| |||||||| || || || ||||| |||||||| || Sbjct 671 GGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTG 633 >seq13659 Length=5019 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || |||||||| || || ||||| || || || |||| ||||| Sbjct 1104 ACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGT 1163 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| || || | ||||||||| ||||||||||| || Sbjct 1164 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 1223 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAA 480729 ||| |||||||| ||||| ||| ||| |||||||||||| | | | || | ||| Sbjct 1224 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAA 1283 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | ||||| || || ||||| Sbjct 1284 -CGTAATCGTCTTTCCTGTCAATGTCTTTACAAAGATTTG 1322 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || || |||||||| | || ||||| | || || |||| ||||| Sbjct 876 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 935 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| || || | ||||||||| ||||||||||| || Sbjct 936 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 995 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| |||||||| ||||| ||| ||| |||||||||||| | | | || | Sbjct 996 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 1055 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || | ||||| || || ||||| Sbjct 1056 CGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTG 1094 >seq4612 Length=25615 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || |||||||| || || ||||| | || ||||||| ||||| Sbjct 15723 ACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGT 15664 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| || || | ||||||||| ||||||||||| || Sbjct 15663 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 15604 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| |||||||| ||||| ||| ||| |||||||||||| | | | || | Sbjct 15603 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 15544 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || | ||||| || || ||||| Sbjct 15543 CGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTG 15505 Score = 102 bits (112), Expect = 5e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || |||||||| || || ||||| | || || |||| ||||| Sbjct 15495 ACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 15436 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| || || | ||||||||| ||||||||||| || Sbjct 15435 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 15376 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| |||||||| ||||| ||| ||| |||||||||||| | | | || | Sbjct 15375 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 15316 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || | ||||| || || ||||| Sbjct 15315 CGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTG 15277 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || || || |||||||| | || ||||| | || ||||||| ||||| Sbjct 15951 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGT 15892 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| | ||||| ||||| || || | ||||||||| ||||||||||| || Sbjct 15891 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 15832 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||| |||||||| ||||| ||| ||| |||||||||||| | | | || | Sbjct 15831 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 15772 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || | ||||| || || ||||| Sbjct 15771 CGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTG 15733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267177390731540