Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4326 170 3e-37 seq6368 98.7 1e-15 >seq4326 Length=27076 Score = 170 bits (188), Expect = 3e-37 Identities = 476/720 (66%), Gaps = 31/720 (4%) Strand=Plus/Plus Query 17987 CTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTG 18046 || ||||| | |||||| | || || |||||| | ||||||||| || | || ||| Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195 Query 18047 AAAGGTAGAGCATCA-ATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTT 18105 | |||||||| || |||| || | || | ||||| ||| | |||| ||||||| Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGT-TCTATTAGAACCGCCTCTCTTATTAT--- 16251 Query 18106 TATTACCCTAGA--TT--TTGGCAAT-TTATTAATTATGTGATTATAATATAATAAACAC 18160 | || | | | || |||| | || || || || || ||| | ||||| ||| Sbjct 16252 --TGACTCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAA---TAATAGACAA 16306 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 || |||||| |||| ||||| ||||| |||||||| || ||||| | | || Sbjct 16307 GCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCA 16366 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||| | ||||| ||| || ||||| ||||| | |||||| |||| ||||||||| | | Sbjct 16367 GGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACA 16426 Query 18281 CCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT--ATTGCTCAGTA 18338 || || || || || || ||||| | ||| |||||| | |||| | | || | Sbjct 16427 CCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCA--A 16484 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 |||| | | |||||| | | | | ||| | || | ||| || || | Sbjct 16485 TCCAATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTGCTTATGGCGTTGA 16544 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | | | || |||||||||| ||||| || || || || ||||| ||||| ||||||| Sbjct 16545 AGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTT 16604 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATAT 18517 |||| || || | || ||||||||||| | | |||||| | | | |||| ||||| | Sbjct 16605 CAGAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCT 16664 Query 18518 TGAAT--CTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575 || | | ||| || | ||||| | ||||| || || |||||| | | Sbjct 16665 GGACTTCTTGGCT---GAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCG 16721 Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635 | || || || || || || |||||||| ||| | ||||||| | ||| Sbjct 16722 CAAAGAAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCA-- 16779 Query 18636 CATCTAT---ATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 || ||| |||||| || | ||| || |||||| ||||||||||| | | | |||| Sbjct 16780 -ATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCT 16838 >seq6368 Length=18664 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || ||| | || ||||||||||| || ||||||| || | || Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || | || || ||||| ||||||||||||||||| || ||||| ||| Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || || || || |||||| ||||| | || || |||||| Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 809 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 ||| || || | || |||||| Sbjct 810 ATACAGAAGGAATCAACACTTCAT 833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731658339118000