Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 170 3e-37
seq6368 98.7 1e-15
>seq4326
Length=27076
Score = 170 bits (188), Expect = 3e-37
Identities = 476/720 (66%), Gaps = 31/720 (4%)
Strand=Plus/Plus
Query 17987 CTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTG 18046
|| ||||| | |||||| | || || |||||| | ||||||||| || | || |||
Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195
Query 18047 AAAGGTAGAGCATCA-ATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTT 18105
| |||||||| || |||| || | || | ||||| ||| | |||| |||||||
Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGT-TCTATTAGAACCGCCTCTCTTATTAT--- 16251
Query 18106 TATTACCCTAGA--TT--TTGGCAAT-TTATTAATTATGTGATTATAATATAATAAACAC 18160
| || | | | || |||| | || || || || || ||| | ||||| |||
Sbjct 16252 --TGACTCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAA---TAATAGACAA 16306
Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220
|| |||||| |||| ||||| ||||| |||||||| || ||||| | | ||
Sbjct 16307 GCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCA 16366
Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280
||||| | ||||| ||| || ||||| ||||| | |||||| |||| ||||||||| | |
Sbjct 16367 GGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACA 16426
Query 18281 CCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT--ATTGCTCAGTA 18338
|| || || || || || ||||| | ||| |||||| | |||| | | || |
Sbjct 16427 CCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCA--A 16484
Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398
|||| | | |||||| | | | | ||| | || | ||| || || |
Sbjct 16485 TCCAATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTGCTTATGGCGTTGA 16544
Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458
| | | || |||||||||| ||||| || || || || ||||| ||||| |||||||
Sbjct 16545 AGAGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTT 16604
Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTC-GGGATAT 18517
|||| || || | || ||||||||||| | | |||||| | | | |||| ||||| |
Sbjct 16605 CAGAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCT 16664
Query 18518 TGAAT--CTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATG 18575
|| | | ||| || | ||||| | ||||| || || |||||| | |
Sbjct 16665 GGACTTCTTGGCT---GAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCG 16721
Query 18576 CGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATT 18635
| || || || || || || |||||||| ||| | ||||||| | |||
Sbjct 16722 CAAAGAAAGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCA-- 16779
Query 18636 CATCTAT---ATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692
|| ||| |||||| || | ||| || |||||| ||||||||||| | | | ||||
Sbjct 16780 -ATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCT 16838
>seq6368
Length=18664
Score = 98.7 bits (108), Expect = 1e-15
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | || ||| | || ||||||||||| || ||||||| || | ||
Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || | || || ||||| ||||||||||||||||| || ||||| |||
Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | | |||| ||| || || || || |||||| ||||| | || || ||||||
Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 809
Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026
||| || || | || ||||||
Sbjct 810 ATACAGAAGGAATCAACACTTCAT 833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731658339118000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |