Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq6368 118 2e-21
seq4612 100 5e-16
seq13659 95.1 2e-14
>seq6368
Length=18664
Score = 118 bits (130), Expect = 2e-21
Identities = 166/233 (71%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| |||||||| | ||| || | || | ||| | || | || || ||||||||
Sbjct 862 ATTATACCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAG 803
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| || | || |||| | || |||| |||||| ||||||||||||| | ||||||||
Sbjct 802 TCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCT 743
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| || |||||||||||||| ||||| || || ||| ||||| | |
Sbjct 742 GGTGGGATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGC 683
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| |||||||| || || ||||| || || | ||| || | ||| ||||||||
Sbjct 682 TCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630
>seq4612
Length=25615
Score = 100 bits (110), Expect = 5e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925
|||||| || | |||||| || || ||||| || | || ||| | || ||||| ||
Sbjct 15933 ATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTG 15874
Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985
|||||||| || || || | ||||||||||| || || |||||||| ||||| || ||
Sbjct 15873 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 15814
Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045
||| ||||| |||||||| | || || |||| || || || ||||||||
Sbjct 15813 CGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGT 15754
Query 172046 TAATGTTTTAATGAATATCTGCATT 172070
|| || || | || || ||||||
Sbjct 15753 CAACGTCTTCACAAAGATTTGCATT 15729
Score = 96.9 bits (106), Expect = 6e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | || | ||| | ||| | |||||| || || |||||
Sbjct 15731 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCA 15672
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || ||| | || ||||| || |||||||| || || || | |||||||||||
Sbjct 15671 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 15612
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| || || ||| ||||| |||||||| | ||
Sbjct 15611 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 15552
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| |||| || || || |||||||| || || || | || || ||||||
Sbjct 15551 ACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15501
Score = 93.3 bits (102), Expect = 8e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | || | ||| | ||| | |||||| || || || ||
Sbjct 15503 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 15444
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || ||| | || ||||| || |||||||| || || || | |||||||||||
Sbjct 15443 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 15384
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| || || ||| ||||| |||||||| | ||
Sbjct 15383 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 15324
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
|| |||| || || || |||||||| || || || | || || ||||||
Sbjct 15323 ACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15273
>seq13659
Length=5019
Score = 95.1 bits (104), Expect = 2e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925
|||||| || | |||||| || || || || || | || ||| | || ||||| ||
Sbjct 894 ATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 953
Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985
|||||||| || || || | ||||||||||| || || |||||||| ||||| || ||
Sbjct 954 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 1013
Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045
||| ||||| |||||||| | || || |||| || || || ||||||||
Sbjct 1014 CGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGT 1073
Query 172046 TAATGTTTTAATGAATATCTGCATT 172070
|| || || | || || ||||||
Sbjct 1074 CAACGTCTTCACAAAGATTTGCATT 1098
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| ||||| | || || | || | ||| | ||| | |||||| ||| || || ||
Sbjct 1096 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCA 1155
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | || ||| | || ||||| || |||||||| || || || | |||||||||||
Sbjct 1156 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 1215
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| ||||| || || ||| ||||| |||||||| | ||
Sbjct 1216 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 1275
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || | ||||| || || || || ||||| || | || || |||||
Sbjct 1276 ACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904871756859000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |