Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq6368 118 2e-21 seq4612 100 5e-16 seq13659 95.1 2e-14 >seq6368 Length=18664 Score = 118 bits (130), Expect = 2e-21 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || | || | ||| | || | || || |||||||| Sbjct 862 ATTATACCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAG 803 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | || |||| | || |||| |||||| ||||||||||||| | |||||||| Sbjct 802 TCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCT 743 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||||||||| ||||| || || ||| ||||| | | Sbjct 742 GGTGGGATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGC 683 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| || || ||||| || || | ||| || | ||| |||||||| Sbjct 682 TCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630 >seq4612 Length=25615 Score = 100 bits (110), Expect = 5e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 |||||| || | |||||| || || ||||| || | || ||| | || ||||| || Sbjct 15933 ATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTG 15874 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||||| || || || | ||||||||||| || || |||||||| ||||| || || Sbjct 15873 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 15814 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 ||| ||||| |||||||| | || || |||| || || || |||||||| Sbjct 15813 CGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGT 15754 Query 172046 TAATGTTTTAATGAATATCTGCATT 172070 || || || | || || |||||| Sbjct 15753 CAACGTCTTCACAAAGATTTGCATT 15729 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || ||||| Sbjct 15731 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCA 15672 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 15671 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 15612 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 15611 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 15552 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || |||| || || || |||||||| || || || | || || |||||| Sbjct 15551 ACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15501 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| || || || || Sbjct 15503 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCA 15444 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 15443 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 15384 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 15383 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 15324 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || |||| || || || |||||||| || || || | || || |||||| Sbjct 15323 ACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15273 >seq13659 Length=5019 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 |||||| || | |||||| || || || || || | || ||| | || ||||| || Sbjct 894 ATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTG 953 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 |||||||| || || || | ||||||||||| || || |||||||| ||||| || || Sbjct 954 CTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTT 1013 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 ||| ||||| |||||||| | || || |||| || || || |||||||| Sbjct 1014 CGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGT 1073 Query 172046 TAATGTTTTAATGAATATCTGCATT 172070 || || || | || || |||||| Sbjct 1074 CAACGTCTTCACAAAGATTTGCATT 1098 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | ||| | |||||| ||| || || || Sbjct 1096 ATTCCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCA 1155 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || ||||| || |||||||| || || || | ||||||||||| Sbjct 1156 GACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGA 1215 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| |||||||| | || Sbjct 1216 GGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCA 1275 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||||| || || || || ||||| || | || || ||||| Sbjct 1276 ACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904871756859000