Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 113 1e-19
seq3361 91.5 4e-13
seq260 91.5 4e-13
>seq4326
Length=27076
Score = 113 bits (124), Expect = 1e-19
Identities = 258/384 (67%), Gaps = 6/384 (2%)
Strand=Plus/Minus
Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288
||||| || ||||| |||||||| || ||||| || || || | | ||| || |
Sbjct 16734 TTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGCTTCAGC 16675
Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348
|||||| || | | || | ||| |||||||||| | ||||| || || || |||
Sbjct 16674 CAAGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGGATGCAGATAGCTATCGAGAAT 16615
Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408
|| || ||| | || ||| |||||||||| ||||||||||| || | | |
Sbjct 16614 ATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGAAAGG 16555
Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468
|| || ||||||||||| ||| | || ||||| || ||| || || | |||||
Sbjct 16554 GACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCAAAAAAGGCTCAGTGGGC- 16496
Query 133469 ATTA-AATGGATCCAGGACAAGC--GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCT 133525
|||| | ||||| ||| | | | | |||||| ||| | ||||||||||
Sbjct 16495 ATTAGATTGGAT--TGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTGCA 16438
Query 133526 GTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGT 133585
| ||| || || |||| || |||| ||| |||| || |||||||| || ||
Sbjct 16437 GCAGTGGAAGGTGTTTTCTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAACGA 16378
Query 133586 GGTATTCTACCTGGACTGTGTTTT 133609
||| || | |||||||||| ||||
Sbjct 16377 GGTCTTATGCCTGGACTGTCTTTT 16354
>seq3361
Length=32766
Score = 91.5 bits (100), Expect = 4e-13
Identities = 120/163 (74%), Gaps = 14/163 (9%)
Strand=Plus/Minus
Query 233260 TAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAG 233319
||||||| || ||||| ||||| || ||||||||||||||||||||||| ||| ||
Sbjct 3974 TAAAAATTGTGCTGCACCATGAGCTATTTGACAATCACGTTCCATTTCACCAAAACGTAG 3915
Query 233320 ACCACCATCATTTGAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTT-----G 233372
|||||||||| ||| | ||| | | | ||||||| ||| ||| || |
Sbjct 3914 ACCACCATCA--CGACTACGACCTTCCATAGGTTGACGA-TTA----AGTATTTGAACAG 3862
Query 233373 GACCCTGAGCACGATAATTAATTTTATCTTTAACCATATGCTT 233415
|||| ||| |||| || ||||||||| | ||||||||||||
Sbjct 3861 GACCACGAGAACGACTATGAATTTTATCATCAACCATATGCTT 3819
Score = 89.7 bits (98), Expect = 2e-12
Identities = 172/248 (69%), Gaps = 8/248 (3%)
Strand=Plus/Minus
Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543
|||||| || | || ||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 3962 TGCACCATGAGCTATTTGACAATCACGTTCCATTTCACCAAAACGTAGACCACCATCACG 3903
Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAG-ATT--AACCATAGGACCGATGGAGCGGCT 251600
| | ||| || ||| |||||| | || ||| ||| |||||| || || ||
Sbjct 3902 ACTACGACCTTCCATAGGTTGACGATTAAGTATTTGAAC---AGGACCACGAGAACGACT 3846
Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660
||| ||||||| ||||||||||| | ||| || || | | || || | ||| ||
Sbjct 3845 ATGAATTTTATCATCAACCATATGCTTTAAACGTTGATAATAAGTTGGTCCTAAGAAAAT 3786
Query 251661 GCTCGAA-GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719
||| |||| || |||||| | | |||||||||| ||| || || || ||
Sbjct 3785 TTGTGAATTTAATTTTCT-TCCAGTAAATCCATTATACATAATTTCATTACCGGTATGTT 3727
Query 251720 CATAACCA 251727
|||||||
Sbjct 3726 GATAACCA 3719
Score = 84.2 bits (92), Expect = 6e-11
Identities = 106/143 (74%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904
|||||||||||||| |||||||| || ||||| || || || || ||| | | ||| |||
Sbjct 2328 ATAGTCATACGACTAGGAATAGCGTGTGGATTAATAATAATATCTGGTGTGATTCCTTCA 2269
Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963
||||| ||||||| ||| | | ||| | ||||| ||| || || ||||||||
Sbjct 2268 CATGTGAATGGCATAT-CTTCTTGACGATAGCGAATTCCACAAGTACCTTTCTGTCCGTG 2210
Query 251964 ACGAGAACTGAACTTATCACCAA 251986
||| | ||| ||||||||||
Sbjct 2209 TCGACTAGCGAATTTATCACCAA 2187
>seq260
Length=98523
Score = 91.5 bits (100), Expect = 4e-13
Identities = 228/344 (66%), Gaps = 2/344 (1%)
Strand=Plus/Plus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
|||||| || ||| ||| || ||||||| ||||||| || |||| ||||||
Sbjct 50311 ATTTCTGACAGTCCCATCGTATTTGATCATAACTGATTCCATAGCTTTAATTAGACGACG 50370
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
||||| || |||||| | ||||| || || || || || | || | ||||||||
Sbjct 50371 TTGAATGTACCCAGTTTCGGCAGTTTTGACTGCAGTGTCTATCAAGCCTTCTCGACCACC 50430
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
|||||| ||||| || | || ||| | || ||| | ||| | ||||||||
Sbjct 50431 CATAGCGTGGAAAAAAAATTCAGTGGGTGTCAAACCAGCAAGGTAAGAGTTTTCAACGAA 50490
Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGG-TAAAGTGTGGCAGGGTCCTGTTCTCAT 302776
||||| | ||| || || || | ||||| |||| ||||| || || | | |
Sbjct 50491 GCCACGAGACTCAGGACCATAATC-ATCTTGGATAAAATGTGGTAGCGTACGATGACGAA 50549
Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836
| ||| | || || | || || |||||||| || || |||| || | || | || |
Sbjct 50550 AACCGAAGGGAATTCTTTTACCTTCAACGTTTTGTTGACCCACACAAGCGATGACTTGAG 50609
Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATA 302880
||||||| | | | || ||||| ||||| |||||||||
Sbjct 50610 AAATATTAATACGAGAACCTTTGGAACCAGCGACGACCATAATA 50653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471377179280635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |