Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4326 113 1e-19 seq3361 91.5 4e-13 seq260 91.5 4e-13 >seq4326 Length=27076 Score = 113 bits (124), Expect = 1e-19 Identities = 258/384 (67%), Gaps = 6/384 (2%) Strand=Plus/Minus Query 133229 TTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATG 133288 ||||| || ||||| |||||||| || ||||| || || || | | ||| || | Sbjct 16734 TTAGCTTTCTTTGCGGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGCTTCAGC 16675 Query 133289 GGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAAT 133348 |||||| || | | || | ||| |||||||||| | ||||| || || || ||| Sbjct 16674 CAAGAAGTCCAGATCCCAGAGGTTCGTTGCTTTTATGGGATGCAGATAGCTATCGAGAAT 16615 Query 133349 ATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAG 133408 || || ||| | || ||| |||||||||| ||||||||||| || | | | Sbjct 16614 ATTCACTCTGAAATGTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGAAAGG 16555 Query 133409 CACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCT 133468 || || ||||||||||| ||| | || ||||| || ||| || || | ||||| Sbjct 16554 GACTTTCTCTTCAACGCCATAAGCAACTTAACTTGTGTTGCAAAAAAGGCTCAGTGGGC- 16496 Query 133469 ATTA-AATGGATCCAGGACAAGC--GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCT 133525 |||| | ||||| ||| | | | | |||||| ||| | |||||||||| Sbjct 16495 ATTAGATTGGAT--TGGAGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTGCA 16438 Query 133526 GTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGT 133585 | ||| || || |||| || |||| ||| |||| || |||||||| || || Sbjct 16437 GCAGTGGAAGGTGTTTTCTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAACGA 16378 Query 133586 GGTATTCTACCTGGACTGTGTTTT 133609 ||| || | |||||||||| |||| Sbjct 16377 GGTCTTATGCCTGGACTGTCTTTT 16354 >seq3361 Length=32766 Score = 91.5 bits (100), Expect = 4e-13 Identities = 120/163 (74%), Gaps = 14/163 (9%) Strand=Plus/Minus Query 233260 TAAAAATGTTGTAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAG 233319 ||||||| || ||||| ||||| || ||||||||||||||||||||||| ||| || Sbjct 3974 TAAAAATTGTGCTGCACCATGAGCTATTTGACAATCACGTTCCATTTCACCAAAACGTAG 3915 Query 233320 ACCACCATCATTTGAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTT-----G 233372 |||||||||| ||| | ||| | | | ||||||| ||| ||| || | Sbjct 3914 ACCACCATCA--CGACTACGACCTTCCATAGGTTGACGA-TTA----AGTATTTGAACAG 3862 Query 233373 GACCCTGAGCACGATAATTAATTTTATCTTTAACCATATGCTT 233415 |||| ||| |||| || ||||||||| | |||||||||||| Sbjct 3861 GACCACGAGAACGACTATGAATTTTATCATCAACCATATGCTT 3819 Score = 89.7 bits (98), Expect = 2e-12 Identities = 172/248 (69%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||||| || | || ||||||||| ||||||||||| ||||| ||||||||||| || Sbjct 3962 TGCACCATGAGCTATTTGACAATCACGTTCCATTTCACCAAAACGTAGACCACCATCACG 3903 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAG-ATT--AACCATAGGACCGATGGAGCGGCT 251600 | | ||| || ||| |||||| | || ||| ||| |||||| || || || Sbjct 3902 ACTACGACCTTCCATAGGTTGACGATTAAGTATTTGAAC---AGGACCACGAGAACGACT 3846 Query 251601 ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 ||| ||||||| ||||||||||| | ||| || || | | || || | ||| || Sbjct 3845 ATGAATTTTATCATCAACCATATGCTTTAAACGTTGATAATAAGTTGGTCCTAAGAAAAT 3786 Query 251661 GCTCGAA-GGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGATT 251719 ||| |||| || |||||| | | |||||||||| ||| || || || || Sbjct 3785 TTGTGAATTTAATTTTCT-TCCAGTAAATCCATTATACATAATTTCATTACCGGTATGTT 3727 Query 251720 CATAACCA 251727 ||||||| Sbjct 3726 GATAACCA 3719 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 |||||||||||||| |||||||| || ||||| || || || || ||| | | ||| ||| Sbjct 2328 ATAGTCATACGACTAGGAATAGCGTGTGGATTAATAATAATATCTGGTGTGATTCCTTCA 2269 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 ||||| ||||||| ||| | | ||| | ||||| ||| || || |||||||| Sbjct 2268 CATGTGAATGGCATAT-CTTCTTGACGATAGCGAATTCCACAAGTACCTTTCTGTCCGTG 2210 Query 251964 ACGAGAACTGAACTTATCACCAA 251986 ||| | ||| |||||||||| Sbjct 2209 TCGACTAGCGAATTTATCACCAA 2187 >seq260 Length=98523 Score = 91.5 bits (100), Expect = 4e-13 Identities = 228/344 (66%), Gaps = 2/344 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||| || ||||||| ||||||| || |||| |||||| Sbjct 50311 ATTTCTGACAGTCCCATCGTATTTGATCATAACTGATTCCATAGCTTTAATTAGACGACG 50370 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||||| || |||||| | ||||| || || || || || | || | |||||||| Sbjct 50371 TTGAATGTACCCAGTTTCGGCAGTTTTGACTGCAGTGTCTATCAAGCCTTCTCGACCACC 50430 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 |||||| ||||| || | || ||| | || ||| | ||| | |||||||| Sbjct 50431 CATAGCGTGGAAAAAAAATTCAGTGGGTGTCAAACCAGCAAGGTAAGAGTTTTCAACGAA 50490 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGG-TAAAGTGTGGCAGGGTCCTGTTCTCAT 302776 ||||| | ||| || || || | ||||| |||| ||||| || || | | | Sbjct 50491 GCCACGAGACTCAGGACCATAATC-ATCTTGGATAAAATGTGGTAGCGTACGATGACGAA 50549 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | ||| | || || | || || |||||||| || || |||| || | || | || | Sbjct 50550 AACCGAAGGGAATTCTTTTACCTTCAACGTTTTGTTGACCCACACAAGCGATGACTTGAG 50609 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATAATA 302880 ||||||| | | | || ||||| ||||| ||||||||| Sbjct 50610 AAATATTAATACGAGAACCTTTGGAACCAGCGACGACCATAATA 50653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471377179280635