Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq3361 105 8e-18 >seq3361 Length=32766 Score = 105 bits (116), Expect = 8e-18 Identities = 197/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 194544 TGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTGAAAATA-AAATTTTTATAGGGC 194602 ||||| |||||| || |||||||| || |||||| || | ||||||| |||| | Sbjct 3740 TGAAATTATGTATAATGGATTTACTGG-AAGAAAATTAAATTCACAAATTTTCTTAGGAC 3798 Query 194603 CAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATG 194662 |||||||||| || ||| | || || |||||| | |||||||| ||| | | || || Sbjct 3799 CAACTTATTATCAACGTTTAAAGCATATGGTTGATGATAAAATTCATAGTCGTTCTCGTG 3858 Query 194663 GGCAAGT--AACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTT 194720 | | || || ||||| |||| ||||| | |||||| || | ||| ||| | Sbjct 3859 GTCCTGTTCAAATACTT--AATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCT 3916 Query 194721 AAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAA 194780 | | ||||| ||||||||| || ||| ||| |||||||| | ||||| ||| Sbjct 3917 ACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCTCATGGTGCAGCACAATTTTTACG 3976 Query 194781 TGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTG 194825 |||| | | ||||| | |||||| | ||| || ||||||| Sbjct 3977 TGAACGTTTATTTTTTGCTAGTGATCCATATCAGGTATATGTTTG 4021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632304952567400