Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq4612 111 1e-19 seq13659 107 2e-18 >seq4612 Length=25615 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||| | || ||||| || || ||| | || || || | | Sbjct 15502 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15561 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 15562 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15621 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || || ||| |||| ||| | | |||| ||||| ||| Sbjct 15622 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAAC 15681 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || ||||| || || |||| Sbjct 15682 ATCCAGAAAGAGTCGACTCTGCATCTTG 15709 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||| | || ||||| || || ||| | || || || | | Sbjct 15730 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15789 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 15790 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15849 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || || ||| |||| ||| | | |||| ||||| ||| Sbjct 15850 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAAC 15909 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || |||| | || |||| | || |||||| Sbjct 15910 ATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGGC 15957 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||| | || ||||| || || ||| | || || || | | Sbjct 15274 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15333 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 15334 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15393 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || || ||| |||| ||| | | |||| || || ||| Sbjct 15394 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 15453 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || ||||| || || |||| Sbjct 15454 ATCCAGAAAGAGTCGACTCTGCATCTTG 15481 >seq13659 Length=5019 Score = 107 bits (118), Expect = 2e-18 Identities = 150/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || | || || || || |||||| | || || || | | Sbjct 1326 GATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAG 1267 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || ||| |||||||||||||||||||| || ||||| || || Sbjct 1266 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 1207 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||||||||| || || || || ||| |||| ||| | | |||| || || || Sbjct 1206 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 1147 Query 24883 CATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||| || || ||||| || || |||| Sbjct 1146 CATTCAGAAAGAGTCGACTCTGCATCTTG 1118 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || ||| | || ||||| || || ||| | || || || | | Sbjct 1097 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 1038 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||||||||| || ||||| || ||| Sbjct 1037 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 978 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||||||||| || || || || ||| |||| ||| | | |||| || || ||| Sbjct 977 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 918 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || || || || |||| | || |||| | || |||||| Sbjct 917 ATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGGC 870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449766258019400