Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq6368 114 1e-20
seq4612 95.1 9e-15
seq13659 87.8 1e-12
>seq6368
Length=18664
Score = 114 bits (126), Expect = 1e-20
Identities = 157/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | |||||| || ||||| || || || ||||| || | || || ||
Sbjct 845 ACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCC 786
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || ||||||||||||||| | || | | ||| || || || || || || |||||
Sbjct 785 ATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTT 726
Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
||||| |||||| | || || | ||||| || |||| | | || ||||| || ||||
Sbjct 725 ATCTTG-AATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTA 667
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||||| || || | || || || || ||||||||
Sbjct 666 TAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630
>seq4612
Length=25615
Score = 95.1 bits (104), Expect = 9e-15
Identities = 151/217 (70%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||| || || || ||||| || ||||| ||||| | | || ||
Sbjct 15717 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCC 15658
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || || ||||| ||||||| | ||| || || || |||||||| |||||
Sbjct 15657 ATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 15598
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || ||| ||| | || | ||| ||| | | || || || | || ||
Sbjct 15597 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGAT 15538
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || ||||| || || || ||||| || ||||||
Sbjct 15537 CGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15501
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
||||| || | ||| | || || ||||| || ||||| ||||| | | || || |
Sbjct 15944 CGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCA 15885
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || | || || ||||| ||||||| | ||| || || || |||||||| ||||||
Sbjct 15884 TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 15825
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | || ||| ||| | || | ||| ||| | | || || || | || ||
Sbjct 15824 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATC 15765
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || ||||| || || || ||||| || ||||||
Sbjct 15764 GTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729
Score = 89.7 bits (98), Expect = 4e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||| || || || ||||| || ||||| || || | | || ||
Sbjct 15489 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 15430
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || || ||||| ||||||| | ||| || || || |||||||| |||||
Sbjct 15429 ATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 15370
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || ||| ||| | || | ||| ||| | | || || || | || ||
Sbjct 15369 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGAT 15310
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || ||||| || || || ||||| || ||||||
Sbjct 15309 CGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15273
>seq13659
Length=5019
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
||||| || | ||| | || || ||||| || ||||| || || | | || || |
Sbjct 883 CGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA 942
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| || | || || ||||| ||||||| | ||| || || || |||||||| ||||||
Sbjct 943 TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTG 1002
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
||||| | || ||| ||| | || | ||| ||| | | || || || | || ||
Sbjct 1003 TCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATC 1062
Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
|| || ||||| || || || ||||| || ||||||
Sbjct 1063 GTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 1098
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630
||| || || | ||| || || || ||||| |||||||| || || | | || ||
Sbjct 1110 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCC 1169
Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690
||| || | || || ||||| ||||||| | ||| || || || |||||||| |||||
Sbjct 1170 ATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 1229
Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750
|||||| | || ||| ||| | || | ||| ||| | | || || || | || ||
Sbjct 1230 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAAT 1289
Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || || ||||| || |||||
Sbjct 1290 CGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385109551568055
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |