Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq3361 109 7e-19 >seq3361 Length=32766 Score = 109 bits (120), Expect = 7e-19 Identities = 211/307 (69%), Gaps = 6/307 (2%) Strand=Plus/Plus Query 193726 ATGGTTTTGATTATACTGGGTCTGAAACAATGTATTGTGGGTTTACTGGTAAAAGAATTG 193785 |||||| | | |||| || ||||| |||||| ||| |||||||| | || |||| Sbjct 3718 ATGGTTATCAACATACCGGTAATGAAATTATGTATAATGGATTTACTGGAAGAA-AATTA 3776 Query 193786 AAAATA-AAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGAT 193844 || | ||||||| |||| |||||||||||||| ||| | || ||||||||| | ||| Sbjct 3777 AATTCACAAATTTTCTTAGGACCAACTTATTATCAACGTTTAAAGCATATGGTTGATGAT 3836 Query 193845 AAAATGCATGCTAGAAGTCATGGACAAGT--GACTACTTTACATCGACAACCAAATTGTG 193902 ||||| ||| | | || ||| | || | ||||| |||| ||||| | | Sbjct 3837 AAAATTCATAGTCGTTCTCGTGGTCCTGTTCAAATACTT--AATCGTCAACCTATGGAAG 3894 Query 193903 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTC 193962 ||||| || | ||| ||| || | ||||| |||||||| || ||| ||| || Sbjct 3895 GTCGTAGTCGTGATGGTGGTCTACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCTC 3954 Query 193963 ATGGTGCTACTCAATTCTTGAATGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCG 194022 ||||||| | ||||| || |||| | | ||||| | |||||| | ||| || Sbjct 3955 ATGGTGCAGCACAATTTTTACGTGAACGTTTATTTTTTGCTAGTGATCCATATCAGGTAT 4014 Query 194023 ATGTTTG 194029 ||||||| Sbjct 4015 ATGTTTG 4021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634992167839400