Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq3361 100 4e-16 seq4691 84.2 3e-11 >seq3361 Length=32766 Score = 100 bits (110), Expect = 4e-16 Identities = 175/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 201876 GAAACAATGTATTGTGGTTTTACCGGAAGAAAAATTCAAAGTA-AAATTTTTATAGGCCC 201934 |||| |||||| ||| ||||| ||||||||| || || | ||||||| |||| || Sbjct 3741 GAAATTATGTATAATGGATTTACTGGAAGAAAA-TTAAATTCACAAATTTTCTTAGGACC 3799 Query 201935 AACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAGAAGTCATGG 201994 ||| || ||||| ||| | || ||||||||| | |||||||| ||| | || ||| Sbjct 3800 AACTTATTATCAACGTTTAAAGCATATGGTTGATGATAAAATTCATAGTCGTTCTCGTGG 3859 Query 201995 TCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAG 202054 || || || | | |||||||||| | ||||| | | |||||| || | Sbjct 3860 TCCTGTTCAAATACTTAATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCTACG 3919 Query 202055 ATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGGGCCACACAATTTTTAAATGA 202114 ||||| ||||||||| |||||| | | |||||| || ||||||||||| ||| Sbjct 3920 TTTTGGTGAAATGGAACGTGATTGTCAAATAGCTCATGGTGCAGCACAATTTTTACGTGA 3979 Query 202115 AAGAATGTTTTT 202126 | | | ||||| Sbjct 3980 ACGTTTATTTTT 3991 >seq4691 Length=25268 Score = 84.2 bits (92), Expect = 3e-11 Identities = 127/175 (73%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 201147 GGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGTT 201206 ||||| ||||||||||| ||||||||| || || || || |||||||||||| ||| Sbjct 20773 GGTATCAATGCAATTGTTGCAATTGCAACATATACCGGTTATAATCAAGAAGATTCTGTG 20832 Query 201207 ATTCTTAAT-AAAGCATCTATTGAAAGAGGTTTATTCGGTACCACAA-CTTATAATACTT 201264 ||| | ||| ||||| |||| || | ||||| || | | || || |||| ||||| Sbjct 20833 ATTATCAATGAAAGC-GCTATACAACGTGGTTTCTTTCG-ATCAGAATTTTATCGTACTT 20890 Query 201265 TTACAGCTGAAGAAACAAAAAATGGTATAG---TAGAGGAAAGGATTGATATACC 201316 || || | |||||||| | ||||||| | |||| ||| | |||| | ||| Sbjct 20891 ATAAAGATCAAGAAACACGACATGGTATGGATTTAGAAGAAGTGTTTGAAAAACC 20945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655088699195000