Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_023613.1
Length=204815
Score E
Sequences producing significant alignments: (Bits) Value
seq3361 100 4e-16
seq4691 84.2 3e-11
>seq3361
Length=32766
Score = 100 bits (110), Expect = 4e-16
Identities = 175/252 (69%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 201876 GAAACAATGTATTGTGGTTTTACCGGAAGAAAAATTCAAAGTA-AAATTTTTATAGGCCC 201934
|||| |||||| ||| ||||| ||||||||| || || | ||||||| |||| ||
Sbjct 3741 GAAATTATGTATAATGGATTTACTGGAAGAAAA-TTAAATTCACAAATTTTCTTAGGACC 3799
Query 201935 AACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCATGCGAGAAGTCATGG 201994
||| || ||||| ||| | || ||||||||| | |||||||| ||| | || |||
Sbjct 3800 AACTTATTATCAACGTTTAAAGCATATGGTTGATGATAAAATTCATAGTCGTTCTCGTGG 3859
Query 201995 TCAAGTAACAACATTACATCGTCAACCAAACTGTGGTCGGTCCCAAGGTGGTGGATTAAG 202054
|| || || | | |||||||||| | ||||| | | |||||| || |
Sbjct 3860 TCCTGTTCAAATACTTAATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCTACG 3919
Query 202055 ATTTGGAGAAATGGAAAAAGATTGTATTTTGGTTCATGGGGCCACACAATTTTTAAATGA 202114
||||| ||||||||| |||||| | | |||||| || ||||||||||| |||
Sbjct 3920 TTTTGGTGAAATGGAACGTGATTGTCAAATAGCTCATGGTGCAGCACAATTTTTACGTGA 3979
Query 202115 AAGAATGTTTTT 202126
| | | |||||
Sbjct 3980 ACGTTTATTTTT 3991
>seq4691
Length=25268
Score = 84.2 bits (92), Expect = 3e-11
Identities = 127/175 (73%), Gaps = 7/175 (4%)
Strand=Plus/Plus
Query 201147 GGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGTT 201206
||||| ||||||||||| ||||||||| || || || || |||||||||||| |||
Sbjct 20773 GGTATCAATGCAATTGTTGCAATTGCAACATATACCGGTTATAATCAAGAAGATTCTGTG 20832
Query 201207 ATTCTTAAT-AAAGCATCTATTGAAAGAGGTTTATTCGGTACCACAA-CTTATAATACTT 201264
||| | ||| ||||| |||| || | ||||| || | | || || |||| |||||
Sbjct 20833 ATTATCAATGAAAGC-GCTATACAACGTGGTTTCTTTCG-ATCAGAATTTTATCGTACTT 20890
Query 201265 TTACAGCTGAAGAAACAAAAAATGGTATAG---TAGAGGAAAGGATTGATATACC 201316
|| || | |||||||| | ||||||| | |||| ||| | |||| | |||
Sbjct 20891 ATAAAGATCAAGAAACACGACATGGTATGGATTTAGAAGAAGTGTTTGAAAAACC 20945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 655088699195000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |