Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq3361 100 4e-16 >seq3361 Length=32766 Score = 100 bits (110), Expect = 4e-16 Identities = 196/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 193301 TGAAACAATGTATTGCGGGTTTACTGGTaaaaaaaTTGAAAATA-AAATTTTTATAGGGC 193359 ||||| |||||| || |||||||| || |||||| || | ||||||| |||| | Sbjct 3740 TGAAATTATGTATAATGGATTTACTGG-AAGAAAATTAAATTCACAAATTTTCTTAGGAC 3798 Query 193360 CAACTTATTACCATCGTCTTAAACACATGGTTAAGGATAAAATGCATGCTAGAAGTCATG 193419 |||||||||| || ||| | || || |||||| | |||||||| ||| | | || || Sbjct 3799 CAACTTATTATCAACGTTTAAAGCATATGGTTGATGATAAAATTCATAGTCGTTCTCGTG 3858 Query 193420 GGCAAGT--GACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTT 193477 | | || | ||||| |||| ||||| | |||||| || | ||| ||| | Sbjct 3859 GTCCTGTTCAAATACTT--AATCGTCAACCTATGGAAGGTCGTAGTCGTGATGGTGGTCT 3916 Query 193478 AAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCCATGGTGCTACTCAATTCTTAAA 193537 | | ||||| ||||||||| || ||| ||| |||||||| | ||||| ||| Sbjct 3917 ACGTTTTGGTGAAATGGAACGTGATTGTCAAATAGCTCATGGTGCAGCACAATTTTTACG 3976 Query 193538 TGAAAGAATGTTTTTGTATTCTGATCCTTTTCAAGTCGATGTTTG 193582 |||| | | ||||| | |||||| | ||| || ||||||| Sbjct 3977 TGAACGTTTATTTTTTGCTAGTGATCCATATCAGGTATATGTTTG 4021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628347708172800