Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq2131 324 1e-82
seq5398 159 3e-33
seq1278 87.8 1e-11
>seq2131
Length=43850
Score = 324 bits (358), Expect = 1e-82
Identities = 972/1480 (66%), Gaps = 34/1480 (2%)
Strand=Plus/Minus
Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476
|| ||| | |||| || || |||||||| || || || | |||||| || || |||||
Sbjct 43233 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 43174
Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536
|| || || | ||||||||||||| ||| | | || | || || |||
Sbjct 43173 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 43114
Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596
|| || || || | || ||||||||||| | |||||| || ||| || ||
Sbjct 43113 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 43054
Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 281654
|| || || || || || | | || | | || || ||||| || || | | ||
Sbjct 43053 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGGATTGTCGTATTACGCTTAA 42996
Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714
| | | ||||| | ||||||||| ||||| | ||| || || | |||| || ||||
Sbjct 42995 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 42936
Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 281773
| | | | ||| | ||| || || | |||| ||||||||||| || | |
Sbjct 42935 GCAACAGCAAGTCTTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 42877
Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833
|| |||||||| || ||||||||||| ||||||| || || || | | || || |||
Sbjct 42876 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 42817
Query 281834 AAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892
|| || | || || | || | | |||||||| ||||||| || || ||||| || ||
Sbjct 42816 AAGAAGTCCTGCAACAGCTTCTGT-ACCTTAGGGATACGAGTGGAACCACCAACCAACAC 42758
Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 281952
||||| || | || | ||||||| || | ||| ||| | || ||||| || |
Sbjct 42757 TATTTCGTGAATTTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGACC 42698
Query 281953 AAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GT 282009
| | | | || | || | | | || || ||| || | ||||| || ||
Sbjct 42697 CAATGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACGT 42638
Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 282069
| | | ||||||| || || |||| || |||| || | | ||||| || ||
Sbjct 42637 G---TAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCGA 42581
Query 282070 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA 282129
| | || |||||| ||||||||||||||||| || || | || || || ||| |
Sbjct 42580 ACTCAATGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTTA 42523
Query 282130 TTGATTCAAATCTGTTTT--ATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--A 282185
||| | ||| | ||| | |||| ||| ||| |||| ||| | || | || |
Sbjct 42522 TTGTCACGAATGTCTTTACCAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCA 42465
Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245
||||||| |||||||||||||||||||| | |||| || | |||| | || | ||
Sbjct 42464 GACGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGA 42405
Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305
| | ||||| |||| | ||| | | |||||| || |||||||||| |||||| |
Sbjct 42404 ATATACCATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATA 42345
Query 282306 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365
| | ||||| || | || || || | |||||| |||| || ||||| |
Sbjct 42344 TCAACACATTACGCTCACCACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCCG 42285
Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425
| || |||||||| |||||||| |||||||||||||| || ||||||||||| || |
Sbjct 42284 TCGGCTCATTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTG 42225
Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCT 282484
|||| | ||| || || || || |||||||| || ||||| || || | ||| ||
Sbjct 42224 CTTGACGTTGACTGTCATTGAAGTAAGCAGGAACTGTTATAACCGCGTCACTCACTGTCC 42165
Query 282485 TTTCCAATATAAGCGCTT---GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 282541
| |||| |||| ||| || | |||||||| | || | ||| || |||||
Sbjct 42164 TGCCCAA-ATAA---CTTTCAGCAACCTCCTTCATTTTTGTCAACACCATCGACGAAATC 42109
Query 282542 TGTTC--TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599
| || |||||| | ||| ||| | ||| || || | | |||
Sbjct 42108 TCCTCCGCGGAGAACA--ACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTAC 42051
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659
||| || | || || | ||||||||||| |||||||| ||||| | | ||||
Sbjct 42050 CACCGACTTGAACCACCTCAAATGGCCAATGCTTCATATCACTCTGAACTGATGGATCAT 41991
Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719
|||| | ||| |||| || || |||||||| | ||||| |||||||||| ||
Sbjct 41990 CAAAACGACGACCGATTAGCCGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCA 41931
Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779
|||| | || ||| |||| ||||| | | | || | ||||| || | ||||| |
Sbjct 41930 CTTGGTTCTTTGCTCCATCACCAATTAAACGCTCAGCATCTGTGAACGCCACATAACTCG 41871
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839
| || || | ||||| |||||||| ||||| || || ||||| |||| || | ||||
Sbjct 41870 GTGTCGTTCTGTTACCCTGATCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACAC 41811
Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879
| ||||| | | ||||| || | ||| || ||||| ||
Sbjct 41810 CAACACACGAATATGTTGTACCAAGATCGATCCCAATGGC 41771
Score = 129 bits (142), Expect = 4e-24
Identities = 355/537 (66%), Gaps = 8/537 (1%)
Strand=Plus/Minus
Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476
|| ||| | |||| || || |||||||| || || || | |||||| || || |||||
Sbjct 37219 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 37160
Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536
|| || || | ||||||||||||| ||| | | || | || || |||
Sbjct 37159 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 37100
Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596
|| || || || | || ||||||||||| | |||||| || ||| || ||
Sbjct 37099 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 37040
Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 281654
|| || || || || || | | || | | || || ||||| || || | | ||
Sbjct 37039 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGGATTGTCGTATTACGCTTAA 36982
Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714
| | | ||||| | ||||||||| ||||| | ||| || || | |||| || ||||
Sbjct 36981 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 36922
Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 281773
| | | | ||| | ||| || || | |||| ||||||||||| || | |
Sbjct 36921 GCAACAGCAAGTCTTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 36863
Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833
|| |||||||| || ||||||||||| ||||||| || || || | | || || |||
Sbjct 36862 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 36803
Query 281834 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892
|| || | || || || || | ||||||||| ||||||| || || ||||| || ||
Sbjct 36802 AAGAAGTCCTGCAACAACTT-TTGTACCTTAGGGATACGAGTGGAACCACCAACCAACAC 36744
Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949
||||| || | ||| | ||||||| || | ||| ||| | || ||||| ||
Sbjct 36743 TATTTCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGG 36687
>seq5398
Length=21971
Score = 159 bits (176), Expect = 3e-33
Identities = 381/570 (67%), Gaps = 16/570 (3%)
Strand=Plus/Plus
Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343
|| ||||| || | |||||| || || | |||| | || |||| | ||||| |||
Sbjct 6198 GTACCACCTCCAAGATCAAATATCAGAATATTCTTCTCACCATCTT---TCTTATCTAGA 6254
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
|| || |||| ||||||||||||||||||||||| || | | | ||| | |||||||
Sbjct 6255 CCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGAATTATATTCAAACCAGCA 6314
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463
||| | || |||||||| || || || | ||||| |||||| ||||| || || |||||
Sbjct 6315 ATTGTGCCAGCATCTTTGGTTGCCTGGCGTTGTGCATCGTTGAAATAGGCTGGGACAGTG 6374
Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523
| || |||| ||||| | ||| |||| ||| | || | |||||| || | |
Sbjct 6375 ACTACTGCATGGGTTACCTTTTTACCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 6434
Query 282524 AAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGAT---ATGAT 282580
|| | ||| | || || | ||||| | | | |||| ||| |||| | | |
Sbjct 6435 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTT 6490
Query 282581 -ACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATC 282639
||||| | ||||||||| || ||||| ||| ||| || | | | || ||
Sbjct 6491 AACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAGTGAGTTATGTC 6550
Query 282640 TGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGT 282699
||| ||| || |||| || | || || || | || || | || ||||| ||
Sbjct 6551 ATTTTGCACAGTTGATTCATCGAATTTCCTGCCGATAAGTCTCTTGACGTCGAAAATTGT 6610
Query 282700 ATTGGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT---CTG 282755
|| ||||| || |||| || | ||| || ||||| ||||| | | | | ||
Sbjct 6611 GTTTTCCGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAAACGCTCGCCTT 6669
Query 282756 TCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTT 282815
| || |||| |||||||| ||||| | | ||||| ||||||||||||||||| |
Sbjct 6670 CCGGAGTGAATGCTACATATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATCT 6729
Query 282816 CAACTTTACCATTTTGCCATACACCTACAC 282845
||||| || ||| ||||||| ||||
Sbjct 6730 CAACTCGGCCTCCTTGAAATACACCAACAC 6759
>seq1278
Length=56774
Score = 87.8 bits (96), Expect = 1e-11
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 435118 GGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAAT 435177
|||||| ||| | |||||| || ||||| | ||| |||||||||||| | | | ||
Sbjct 12067 GGTCTTTCACCATCTGAATTCTTTTTCCATGCTATGAGTGGTCGTGAAGGATTGACTGAT 12008
Query 435178 ACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAG 435228
|| ||| | |||||||| ||||| |||||||| ||| ||| ||| ||||||
Sbjct 12007 ACTGCTGTAAAAACTGCAGATACAGGTTATATGCAACGAAGACTGGTCAAG 11957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739483768198230
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