Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2131 324 1e-82 seq5398 159 3e-33 seq1278 87.8 1e-11 >seq2131 Length=43850 Score = 324 bits (358), Expect = 1e-82 Identities = 972/1480 (66%), Gaps = 34/1480 (2%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| || || |||||||| || || || | |||||| || || ||||| Sbjct 43233 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 43174 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || || | ||||||||||||| ||| | | || | || || ||| Sbjct 43173 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 43114 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || || | || ||||||||||| | |||||| || ||| || || Sbjct 43113 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 43054 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 281654 || || || || || || | | || | | || || ||||| || || | | || Sbjct 43053 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGGATTGTCGTATTACGCTTAA 42996 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | | ||||| | ||||||||| ||||| | ||| || || | |||| || |||| Sbjct 42995 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 42936 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 281773 | | | | ||| | ||| || || | |||| ||||||||||| || | | Sbjct 42935 GCAACAGCAAGTCTTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 42877 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 || |||||||| || ||||||||||| ||||||| || || || | | || || ||| Sbjct 42876 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 42817 Query 281834 AAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 || || | || || | || | | |||||||| ||||||| || || ||||| || || Sbjct 42816 AAGAAGTCCTGCAACAGCTTCTGT-ACCTTAGGGATACGAGTGGAACCACCAACCAACAC 42758 Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTC 281952 ||||| || | || | ||||||| || | ||| ||| | || ||||| || | Sbjct 42757 TATTTCGTGAATTTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGGACC 42698 Query 281953 AAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GT 282009 | | | | || | || | | | || || ||| || | ||||| || || Sbjct 42697 CAATGTACCACGGAATAGATCGGCATTCAACTCCTCAAATCGTGCACGAGTAATCGACGT 42638 Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 282069 | | | ||||||| || || |||| || |||| || | | ||||| || || Sbjct 42637 G---TAAAAATCAATACCATCACACAACGAGTCAATCTCCAGATTCGTTTGGGTGCTCGA 42581 Query 282070 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA 282129 | | || |||||| ||||||||||||||||| || || | || || || ||| | Sbjct 42580 ACTCAATGTACGTTTCGCACGTTCACATGCTGTTCTCAGGCGACGCAATGCAC--GCTTA 42523 Query 282130 TTGATTCAAATCTGTTTT--ATATTTTCTCTTGAAATCTTCAACACACCATGTTACA--A 282185 ||| | ||| | ||| | |||| ||| ||| |||| ||| | || | || | Sbjct 42522 TTGTCACGAATGTCTTTACCAAATTTCTTCTGGAACTCTTTCACAAAG--TGATCCACCA 42465 Query 282186 GACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGA 282245 ||||||| |||||||||||||||||||| | |||| || | |||| | || | || Sbjct 42464 GACGATTGTCAAAATCTTCACCTCCCAAGTGTGTATCACCAGCAGTAGACTTCACCTCGA 42405 Query 282246 AAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | | ||||| |||| | ||| | | |||||| || |||||||||| |||||| | Sbjct 42404 ATATACCATCCTCAATTGTCAAGATGGACACATCAAATGTACCACCACCCAAATCAAATA 42345 Query 282306 TAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 | | ||||| || | || || || | |||||| |||| || ||||| | Sbjct 42344 TCAACACATTACGCTCACCACCAACCTTCTTGTCTAAACCATAGGCAATTGCCGCAGCCG 42285 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 | || |||||||| |||||||| |||||||||||||| || ||||||||||| || | Sbjct 42284 TCGGCTCATTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTG 42225 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCT 282484 |||| | ||| || || || || |||||||| || ||||| || || | ||| || Sbjct 42224 CTTGACGTTGACTGTCATTGAAGTAAGCAGGAACTGTTATAACCGCGTCACTCACTGTCC 42165 Query 282485 TTTCCAATATAAGCGCTT---GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 282541 | |||| |||| ||| || | |||||||| | || | ||| || ||||| Sbjct 42164 TGCCCAA-ATAA---CTTTCAGCAACCTCCTTCATTTTTGTCAACACCATCGACGAAATC 42109 Query 282542 TGTTC--TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599 | || |||||| | ||| ||| | ||| || || | | ||| Sbjct 42108 TCCTCCGCGGAGAACA--ACTTTTTCTCACCCTTATACTCAACACGAATCTTCAGCTTAC 42051 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 ||| || | || || | ||||||||||| |||||||| ||||| | | |||| Sbjct 42050 CACCGACTTGAACCACCTCAAATGGCCAATGCTTCATATCACTCTGAACTGATGGATCAT 41991 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 |||| | ||| |||| || || |||||||| | ||||| |||||||||| || Sbjct 41990 CAAAACGACGACCGATTAGCCGCTTCGCATCAAACACTGTATTTGTTGGATTAATAGCCA 41931 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 |||| | || ||| |||| ||||| | | | || | ||||| || | ||||| | Sbjct 41930 CTTGGTTCTTTGCTCCATCACCAATTAAACGCTCAGCATCTGTGAACGCCACATAACTCG 41871 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || || | ||||| |||||||| ||||| || || ||||| |||| || | |||| Sbjct 41870 GTGTCGTTCTGTTACCCTGATCATTGGCAATTATCTCCACTTTGCCATGCTGGAAAACAC 41811 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 | ||||| | | ||||| || | ||| || ||||| || Sbjct 41810 CAACACACGAATATGTTGTACCAAGATCGATCCCAATGGC 41771 Score = 129 bits (142), Expect = 4e-24 Identities = 355/537 (66%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||| | |||| || || |||||||| || || || | |||||| || || ||||| Sbjct 37219 TTGTCAACAGCAGATACGTTCAGAATACCGTTCGCGTCTATATCAAACGTCACCTCAATC 37160 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || || | ||||||||||||| ||| | | || | || || ||| Sbjct 37159 TGGGGAGTACCACGAGGAGCAGGTGGGATACCTGAGAGTTCGAACTTGCCAAGCAGATTG 37100 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTA 281596 || || || || | || ||||||||||| | |||||| || ||| || || Sbjct 37099 TTGTCCTTCGTCAGAGCACGCTCACCCTCGAACACCTGGATAAGCACACCAGGCTGGTTG 37040 Query 281597 TCTGAATAAGTTGTAAATACTCTGGATTTT--TTACAAGGAATTGTTGTGTTTCTATCAA 281654 || || || || || || | | || | | || || ||||| || || | | || Sbjct 37039 TCCGAGTACGTCGTGAA--CGTTTGAGTCTGCTTCGTCGGGATTGTCGTATTACGCTTAA 36982 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | | ||||| | ||||||||| ||||| | ||| || || | |||| || |||| Sbjct 36981 TCAGAGCCGTCATTACACCACCAGCCGTTTCAAGACCCAGTGACAATGGAGCCACGTCAA 36922 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATA 281773 | | | | ||| | ||| || || | |||| ||||||||||| || | | Sbjct 36921 GCAACAGCAAGTCTTGCACAGCCTCA-CACTTGTCACCACTTAGAATAGCTGCCTGCACA 36863 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 || |||||||| || ||||||||||| ||||||| || || || | | || || ||| Sbjct 36862 GCTGCACCATAAGCCACAGCTTCATCCGGATTAATAGATTTGTTCAACTCCTTCCCGTTG 36803 Query 281834 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 || || | || || || || | ||||||||| ||||||| || || ||||| || || Sbjct 36802 AAGAAGTCCTGCAACAACTT-TTGTACCTTAGGGATACGAGTGGAACCACCAACCAACAC 36744 Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 ||||| || | ||| | ||||||| || | ||| ||| | || ||||| || Sbjct 36743 TATTTCGTGAATCTGGGCCTTATCCATCTTAGCATCTCGCAAAGCCTTCTCAACAGG 36687 >seq5398 Length=21971 Score = 159 bits (176), Expect = 3e-33 Identities = 381/570 (67%), Gaps = 16/570 (3%) Strand=Plus/Plus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || ||||| || | |||||| || || | |||| | || |||| | ||||| ||| Sbjct 6198 GTACCACCTCCAAGATCAAATATCAGAATATTCTTCTCACCATCTT---TCTTATCTAGA 6254 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| ||||||||||||||||||||||| || | | | ||| | ||||||| Sbjct 6255 CCGTAAGCAATCGCAGCAGCAGTTGGTTCATTAATGATCCGAATTATATTCAAACCAGCA 6314 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| | || |||||||| || || || | ||||| |||||| ||||| || || ||||| Sbjct 6315 ATTGTGCCAGCATCTTTGGTTGCCTGGCGTTGTGCATCGTTGAAATAGGCTGGGACAGTG 6374 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 | || |||| ||||| | ||| |||| ||| | || | |||||| || | | Sbjct 6375 ACTACTGCATGGGTTACCTTTTTACCAAGATAGGATTCAGCAAACTCTTTCATCTTCCCT 6434 Query 282524 AAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTTTGAT---ATGAT 282580 || | ||| | || || | ||||| | | | |||| ||| |||| | | | Sbjct 6435 AACACCATAGCAGAGATCTCCTCTGGGGCAAACGTCTTGACTTC----TGATCCAACGTT 6490 Query 282581 -ACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATATC 282639 ||||| | ||||||||| || ||||| ||| ||| || | | | || || Sbjct 6491 AACTTCGATATATGGTTTGTTCTTTTTATTAACAACGGAAAAAGGGTAGTGAGTTATGTC 6550 Query 282640 TGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGT 282699 ||| ||| || |||| || | || || || | || || | || ||||| || Sbjct 6551 ATTTTGCACAGTTGATTCATCGAATTTCCTGCCGATAAGTCTCTTGACGTCGAAAATTGT 6610 Query 282700 ATTGGTTGGATTAACTG-CAGCTTGATATTTGGCTGCATCTCCAATCAGATGTT---CTG 282755 || ||||| || |||| || | ||| || ||||| ||||| | | | | || Sbjct 6611 GTTTTCCGGATTTGATGTCAGC-TGGTTTTTAGCAGCATCCCCAATTAAACGCTCGCCTT 6669 Query 282756 TCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTT 282815 | || |||| |||||||| ||||| | | ||||| ||||||||||||||||| | Sbjct 6670 CCGGAGTGAATGCTACATATGAGGGAGTAATCCTGTTACCCTGATCATTCGCAATAATCT 6729 Query 282816 CAACTTTACCATTTTGCCATACACCTACAC 282845 ||||| || ||| ||||||| |||| Sbjct 6730 CAACTCGGCCTCCTTGAAATACACCAACAC 6759 >seq1278 Length=56774 Score = 87.8 bits (96), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 435118 GGTCTTGGACCTTTTGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAAT 435177 |||||| ||| | |||||| || ||||| | ||| |||||||||||| | | | || Sbjct 12067 GGTCTTTCACCATCTGAATTCTTTTTCCATGCTATGAGTGGTCGTGAAGGATTGACTGAT 12008 Query 435178 ACAGCTATTAAAACTGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAG 435228 || ||| | |||||||| ||||| |||||||| ||| ||| ||| |||||| Sbjct 12007 ACTGCTGTAAAAACTGCAGATACAGGTTATATGCAACGAAGACTGGTCAAG 11957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739483768198230