Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq4612 91.5 1e-13 seq13659 87.8 2e-12 seq6368 87.8 2e-12 >seq4612 Length=25615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/234 (70%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 137179 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 137238 ||||| ||||| |||| |||| ||| | ||| | || || ||||| || ||||||||| Sbjct 15961 ACATG-CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAA 15903 Query 137239 TCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 137297 || || || | || | ||||| | || |||||||| | |||| |||||| || || Sbjct 15902 TCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTC 15844 Query 137298 GGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGG 137357 ||||| || ||||||||||| || || ||| | | || | || || | || Sbjct 15843 AGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGG 15784 Query 137358 TTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || | || | |||||| || ||||| || || || || |||||||| Sbjct 15783 CTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730 >seq13659 Length=5019 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 137179 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 137238 ||||| ||||| |||| |||| ||| | ||| | || || ||||| || |||||||| Sbjct 866 ACATG-CCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAG 924 Query 137239 TCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATC 137297 || || || | || | ||||| | || |||||||| | |||| |||||| || || Sbjct 925 TCAGACAGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTC 983 Query 137298 GGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGG 137357 ||||| || ||||||||||| || || ||| | | || | || || | || Sbjct 984 AGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGG 1043 Query 137358 TTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || | || | |||||| || ||||| || || || || |||||||| Sbjct 1044 CTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || |||| ||| | || | ||| | || || ||||| || |||||||| || | Sbjct 1099 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAC 1158 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | ||||| | || |||||||| | |||| |||||| || || ||||| Sbjct 1159 AGAGTACGTCCA-TCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGG 1217 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| || || ||| | | || | || || | || || || Sbjct 1218 AATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAAC 1277 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | |||||| || |||||||| ||||| || |||||||| Sbjct 1278 CTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325 >seq6368 Length=18664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || | ||||| ||| ||||| || ||||| || || ||| Sbjct 856 CCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAA 797 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | ||||| |||||||| |||||| | || |||||||| || || || || Sbjct 796 AGAGTTCGTCCA-TCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGG 738 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCTGTGGGTTCTA 137362 ||||||||||| || | | |||| | ||| ||| ||| | || || | || || | Sbjct 737 GATGCCTTCTTTATC-TTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAA 679 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| | || | || || || || | ||| || ||||| || ||||| Sbjct 678 CTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488401375686000