Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq13659 168 1e-36
seq4612 167 5e-36
seq6368 156 8e-33
>seq13659
Length=5019
Score = 168 bits (186), Expect = 1e-36
Identities = 167/216 (77%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | |||||||| || |||||||| || || || ||||| ||| | | ||
Sbjct 1110 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCC 1169
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| | || || ||||| || || | | |||||| || ||||| || ||||| ||
Sbjct 1170 ATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 1229
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||| ||||| ||||| ||||| ||||| |||||| |||| || || ||||| || ||
Sbjct 1230 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAAT 1289
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||| |||||||| ||||||||||| || |||||
Sbjct 1290 CGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325
Score = 159 bits (176), Expect = 7e-34
Identities = 177/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635
||||| | ||||| | | |||||||| | || | || || |||||||| || || |
Sbjct 863 ATCACATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGT 922
Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695
| ||||| ||| | | || ||||| | || || ||||| || || | | |||||| |
Sbjct 923 AGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGT 982
Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755
| ||||| || ||||| || ||||| ||||| ||||| ||||| ||||| |||||| |||
Sbjct 983 CAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAG 1042
Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| || || || || || |||||||| || ||||||||||| ||||| || ||||||
Sbjct 1043 GCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 1098
>seq4612
Length=25615
Score = 167 bits (184), Expect = 5e-36
Identities = 167/217 (77%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | |||||||| || |||||||| || || |||||||| ||| | | ||
Sbjct 15717 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCC 15658
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| | || || ||||| || || | | |||||| || ||||| || ||||| ||
Sbjct 15657 ATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 15598
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||| ||||| ||||| ||||| ||||| |||||| |||| || || || || || ||
Sbjct 15597 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGAT 15538
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||||| || ||||||||||| ||||| || ||||||
Sbjct 15537 CGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15501
Score = 165 bits (182), Expect = 2e-35
Identities = 178/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635
||||| | ||||| | | |||||||| | || | || || |||||||| || || |
Sbjct 15964 ATCACATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGT 15905
Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695
||||||| ||| | | || ||||| | || || ||||| || || | | |||||| |
Sbjct 15904 AATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGT 15845
Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755
| ||||| || ||||| || ||||| ||||| ||||| ||||| ||||| |||||| |||
Sbjct 15844 CAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAG 15785
Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| || || || || || |||||||| || ||||||||||| ||||| || ||||||
Sbjct 15784 GCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729
Score = 161 bits (178), Expect = 2e-34
Identities = 166/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || | |||||||| || |||||||| || || || ||||| ||| | | ||
Sbjct 15489 ACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCC 15430
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| | || || ||||| || || | | |||||| || ||||| || ||||| ||
Sbjct 15429 ATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTT 15370
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||||| ||||| ||||| ||||| ||||| |||||| |||| || || || || || ||
Sbjct 15369 GTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGAT 15310
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||||| || ||||||||||| ||||| || ||||||
Sbjct 15309 CGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15273
>seq6368
Length=18664
Score = 156 bits (172), Expect = 8e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || | | ||| || || | || || || ||||| |||||||||||||| || |
Sbjct 858 TACCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGG 799
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| ||| || ||||| |||||||| |||||||| ||||| | |||||| ||||| |
Sbjct 798 AAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTG 739
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| ||||||||||| || || || || ||| || |||||| ||| || |
Sbjct 738 GGATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAA 679
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| | ||||| || || || || | ||||| || || ||||||||
Sbjct 678 CTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981533402017345
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |