Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq260 111 4e-19
seq6389 93.3 1e-13
>seq260
Length=98523
Score = 111 bits (122), Expect = 4e-19
Identities = 360/549 (66%), Gaps = 35/549 (6%)
Strand=Plus/Minus
Query 304952 TCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGA 305011
||||| | || || ||| ||| | ||||| | |||||||||| ||||||||||||
Sbjct 51957 TCTGGACGCCCATTGAAGTCTATCAAACAACGACTCAAAGGTAAAGCTGGTCGTATTCGA 51898
Query 305012 GGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGAT--- 305068
|||||||| ||||| ||||||||||| || || | | ||| |||||| | ||
Sbjct 51897 GGTAATCTTATGGGGAAACGTGTTGACTTCTCAGCTCGTACTGTTATCACAGCCGACCCC 51838
Query 305069 --TCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACAT 305126
|||||| |||| || || |||| || ||| ||| ||| ||| ||||| |
Sbjct 51837 AATCTCAATTTAG-----ATCAAGTAGGCGTCCCACGAACAATAGCTCAAAATCTAACTT 51783
Query 305127 TTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTG-AGACGTTGTGTTCTTAATGGA 305185
||| ||| ||||| | || || | || ||| | | | | || | ||||||
Sbjct 51782 ATCCTGAGGTAGTTACTCAATTTAACATAGACCACTTGCAAAAGCTA-GTACAGAATGGA 51724
Query 305186 AATAGCAAGTATCCAGGTGCTC-GTGCTGTTATAAAACACAAGCAAAAGAAGACAATATC 305244
| | ||||| |||||| || |||| || || || | ||| |||
Sbjct 51723 ACCCTC---TATCCTGGTGCTAAGT----TTATTGTACGTGAG--AACGGAGATCGTATA 51673
Query 305245 TTTGAACCATATCGATTTAAAACAATTCAG---TAAAATGCTTGAAATTAATGATATTGT 305301
| || ||||| |||| ||||| ||| | ||| | || | | |||||
Sbjct 51672 GATTTACGATATCATCCTAAAGT--TTCAGACCTAACA--CTTCAGGTTGGTTACATTGT 51617
Query 305302 TATCAGACATTTG---AATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCA 305358
| | ||| || ||||| ||| | || | |||||| | |||||| | |||||
Sbjct 51616 TGAGCGGCATATGTTAAATGA---TGACTTTGTGATATTCAATCGTCAACCAACGCTGCA 51560
Query 305359 TAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA 305418
|||||||||||||||| |||| || ||||| || || | | || ||||| ||||
Sbjct 51559 TAAAATGTCTATGATGTGTCATCGTGTTAAAGTCTTGCCTTGGTCTACGTTTCGTCTAAA 51500
Query 305419 TGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGT 305478
| || || | | | ||||||||||| ||||| ||||| ||||||||||| | ||| |
Sbjct 51499 TCTATCTGTTACTTCACCTTATAATGCTGATTTCGATGGCGATGAAATGAACTTACATCT 51440
Query 305479 ACCTCAATC 305487
|| |||||
Sbjct 51439 CCCACAATC 51431
>seq6389
Length=18593
Score = 93.3 bits (102), Expect = 1e-13
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298
||| | |||||| |||||||| |||||| |||| ||||||||||| ||||||| || |
Sbjct 18475 CATCATACCACCGGCATTATCAAATTCAC-CGCAATAATTTGGTGCAGAAAATAAGGTTA 18417
Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353
|||| | |||| | || |||||| ||||||||||||| |||| ||| || ||
Sbjct 18416 CTAACTGACGACGACAGAAAAATTCAAAACCATCTTCAACTACTTGATGCGCTCG 18362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186457662959155
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |