Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq260 111 4e-19 seq6389 93.3 1e-13 >seq260 Length=98523 Score = 111 bits (122), Expect = 4e-19 Identities = 360/549 (66%), Gaps = 35/549 (6%) Strand=Plus/Minus Query 304952 TCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGA 305011 ||||| | || || ||| ||| | ||||| | |||||||||| |||||||||||| Sbjct 51957 TCTGGACGCCCATTGAAGTCTATCAAACAACGACTCAAAGGTAAAGCTGGTCGTATTCGA 51898 Query 305012 GGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGAT--- 305068 |||||||| ||||| ||||||||||| || || | | ||| |||||| | || Sbjct 51897 GGTAATCTTATGGGGAAACGTGTTGACTTCTCAGCTCGTACTGTTATCACAGCCGACCCC 51838 Query 305069 --TCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACAT 305126 |||||| |||| || || |||| || ||| ||| ||| ||| ||||| | Sbjct 51837 AATCTCAATTTAG-----ATCAAGTAGGCGTCCCACGAACAATAGCTCAAAATCTAACTT 51783 Query 305127 TTCCAGAGAAAGTTAACGAGAAAAATATTAAACATTTG-AGACGTTGTGTTCTTAATGGA 305185 ||| ||| ||||| | || || | || ||| | | | | || | |||||| Sbjct 51782 ATCCTGAGGTAGTTACTCAATTTAACATAGACCACTTGCAAAAGCTA-GTACAGAATGGA 51724 Query 305186 AATAGCAAGTATCCAGGTGCTC-GTGCTGTTATAAAACACAAGCAAAAGAAGACAATATC 305244 | | ||||| |||||| || |||| || || || | ||| ||| Sbjct 51723 ACCCTC---TATCCTGGTGCTAAGT----TTATTGTACGTGAG--AACGGAGATCGTATA 51673 Query 305245 TTTGAACCATATCGATTTAAAACAATTCAG---TAAAATGCTTGAAATTAATGATATTGT 305301 | || ||||| |||| ||||| ||| | ||| | || | | ||||| Sbjct 51672 GATTTACGATATCATCCTAAAGT--TTCAGACCTAACA--CTTCAGGTTGGTTACATTGT 51617 Query 305302 TATCAGACATTTG---AATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCA 305358 | | ||| || ||||| ||| | || | |||||| | |||||| | ||||| Sbjct 51616 TGAGCGGCATATGTTAAATGA---TGACTTTGTGATATTCAATCGTCAACCAACGCTGCA 51560 Query 305359 TAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAA 305418 |||||||||||||||| |||| || ||||| || || | | || ||||| |||| Sbjct 51559 TAAAATGTCTATGATGTGTCATCGTGTTAAAGTCTTGCCTTGGTCTACGTTTCGTCTAAA 51500 Query 305419 TGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGT 305478 | || || | | | ||||||||||| ||||| ||||| ||||||||||| | ||| | Sbjct 51499 TCTATCTGTTACTTCACCTTATAATGCTGATTTCGATGGCGATGAAATGAACTTACATCT 51440 Query 305479 ACCTCAATC 305487 || ||||| Sbjct 51439 CCCACAATC 51431 >seq6389 Length=18593 Score = 93.3 bits (102), Expect = 1e-13 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | |||||| |||||||| |||||| |||| ||||||||||| ||||||| || | Sbjct 18475 CATCATACCACCGGCATTATCAAATTCAC-CGCAATAATTTGGTGCAGAAAATAAGGTTA 18417 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 |||| | |||| | || |||||| ||||||||||||| |||| ||| || || Sbjct 18416 CTAACTGACGACGACAGAAAAATTCAAAACCATCTTCAACTACTTGATGCGCTCG 18362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186457662959155