Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4612 116 2e-21 seq13659 107 1e-18 >seq4612 Length=25615 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || ||||||||||| || Sbjct 15728 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGAC 15669 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 15668 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 15609 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | || || Sbjct 15608 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCAAC 15550 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||| ||||| || ||||| || |||||||| ||||| Sbjct 15549 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15502 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || |||||||| || || Sbjct 15500 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGAC 15441 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 15440 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 15381 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | || || Sbjct 15380 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCAAC 15322 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||| ||||| || ||||| || |||||||| ||||| Sbjct 15321 CTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15274 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || ||||||||||| || || || ||| | || ||||| || || || || || Sbjct 15921 CTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15862 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||| || || || | || | |||||||||||| || ||| |||| |||| Sbjct 15861 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACAT 15803 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | || || || | || || || | ||||||||| ||||| || ||||| || | Sbjct 15802 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 15743 Query 33737 CAAAGATCTGCAT 33749 ||||||| ||||| Sbjct 15742 CAAAGATTTGCAT 15730 >seq13659 Length=5019 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || |||||||| || || || || ||| | || ||||| || || || || || Sbjct 906 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 965 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||||| || || || | || | |||||||||||| || ||| |||| |||| Sbjct 966 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACAT 1024 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | || || || | || || || | ||||||||| ||||| || ||||| || | Sbjct 1025 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 1084 Query 33737 CAAAGATCTGCAT 33749 ||||||| ||||| Sbjct 1085 CAAAGATTTGCAT 1097 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | || | ||| ||||| |||||| || |||||||| || || Sbjct 1099 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAC 1158 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| | || ||||| || || || || || |||||||| || || || | || Sbjct 1159 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 1218 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||||||| || ||| |||| |||| || | || || || | || || Sbjct 1219 ATACCTTCTTTGTCTTGGATCTTCGCTTTC-ACATTCTCAATAGTATCACTAGGCTCAAC 1277 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||| ||||| || ||||| || || ||||||||||| ||||| Sbjct 1278 CTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328610438001600