Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4612 111 4e-19 seq13659 109 1e-18 seq6368 89.7 1e-12 >seq4612 Length=25615 Score = 111 bits (122), Expect = 4e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| || || || || | ||| || | || Sbjct 15517 AAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGTGATACTATTGAGAAT 15576 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| |||||||| ||| || ||| ||| | | || || Sbjct 15577 GTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATT 15635 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||||||||||||||| | ||| || | ||||||||| ||||||||||||| Sbjct 15636 CGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACATCCAGAAAGAGTC 15695 Query 206364 TACTCTTCACCTTGT 206378 ||||| || ||||| Sbjct 15696 GACTCTGCATCTTGT 15710 Score = 105 bits (116), Expect = 2e-17 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| || || || || | ||| || | || Sbjct 15289 AAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGTGATACTATTGAGAAT 15348 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| |||||||| ||| || ||| ||| | | || || Sbjct 15349 GTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATT 15407 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||||||||||||||| | ||| || | || |||||| ||||||||||||| Sbjct 15408 CGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTC 15467 Query 206364 TACTCTTCACCTTGT 206378 ||||| || ||||| Sbjct 15468 GACTCTGCATCTTGT 15482 Score = 105 bits (116), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| || || || || | ||| || | || Sbjct 15745 AAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGTGATACTATTGAGAAT 15804 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| |||||||| ||| || ||| ||| | | || || Sbjct 15805 GTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATT 15863 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||||||||||||||| | ||| || | ||||||||| ||||||||||||| Sbjct 15864 CGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACATCCAGAAAGAGTC 15923 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || | || |||||| || | || || Sbjct 15924 AACCTTACATCTTGTTCTGCGCCTACG 15950 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || ||||| ||||||||||||| || ||||||| || ||| | |||||||||| Sbjct 15482 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 15423 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||| || ||||| || | |||||||| Sbjct 15422 AACTGCTTACCAGCGAATATCAAACGTTGTTG 15391 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || ||||| ||||||||||||| || || |||| || ||| | |||||||||| Sbjct 15710 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCC 15651 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||| || ||||| || | |||||||| Sbjct 15650 AACTGCTTACCAGCGAATATCAAACGTTGTTG 15619 >seq13659 Length=5019 Score = 109 bits (120), Expect = 1e-18 Identities = 147/201 (73%), Gaps = 3/201 (1%) Strand=Plus/Minus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || | |||||||| ||||| || ||||| || || | ||| || | Sbjct 1316 TTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGTGATACTATT 1257 Query 206239 GAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||||| || ||| ||||| |||||||| ||| || ||| ||| | | Sbjct 1256 GAGAATGTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTT 1198 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || ||||| || |||||||||||||||||| | ||| || | || |||||| | ||||| Sbjct 1197 GATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATTCAGAA 1138 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 |||||| ||||| || ||||| Sbjct 1137 AGAGTCGACTCTGCATCTTGT 1117 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||| | || || || |||||||| || || || || | ||| || | || Sbjct 1082 AAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGTGATACTATTGAGAAT 1023 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| |||||||| ||| || ||| ||| | | || || Sbjct 1022 GTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATT 964 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||||||||||||||| | ||| || | || |||||| ||||||||||||| Sbjct 963 CGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTC 904 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || | || |||||| || | || || Sbjct 903 AACCTTACATCTTGTTCTGCGCCTACG 877 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || ||||| ||||||||||| | || ||||||| || ||| | |||||||||| Sbjct 1117 ACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1176 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||| || ||||| || | |||||||| Sbjct 1177 AACTGCTTACCAGCGAATATCAAACGTTGTTG 1208 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || |||||| || | || ||||||||||||| || ||||||| || ||| Sbjct 877 CGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA 936 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||||||||| |||||| || ||||| || | |||||||| Sbjct 937 CGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTG 980 >seq6368 Length=18664 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || |||||||| || || | ||||| || | |||| ||| | ||| || Sbjct 645 AAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCTGATACAATAGAAGCA 704 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| |||||||| || || ||| ||| | || || || Sbjct 705 GTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAACAACGTCTAATTTTT 764 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| | ||| | |||| || || | ||||| || || Sbjct 765 GCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAATATACAGAAGGAATCA 824 Query 206365 ACTCTTCACCTTGT 206378 || ||||| ||||| Sbjct 825 ACACTTCATCTTGT 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181467156744955