Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 111 4e-19
seq13659 109 1e-18
seq6368 89.7 1e-12
>seq4612
Length=25615
Score = 111 bits (122), Expect = 4e-19
Identities = 143/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| ||| | || || || |||||||| || || || || | ||| || | ||
Sbjct 15517 AAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGTGATACTATTGAGAAT 15576
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| |||||||| ||| || ||| ||| | | || ||
Sbjct 15577 GTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATT 15635
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||||||||||||||| | ||| || | ||||||||| |||||||||||||
Sbjct 15636 CGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACATCCAGAAAGAGTC 15695
Query 206364 TACTCTTCACCTTGT 206378
||||| || |||||
Sbjct 15696 GACTCTGCATCTTGT 15710
Score = 105 bits (116), Expect = 2e-17
Identities = 142/195 (73%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| ||| | || || || |||||||| || || || || | ||| || | ||
Sbjct 15289 AAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGTGATACTATTGAGAAT 15348
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| |||||||| ||| || ||| ||| | | || ||
Sbjct 15349 GTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATT 15407
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||||||||||||||| | ||| || | || |||||| |||||||||||||
Sbjct 15408 CGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTC 15467
Query 206364 TACTCTTCACCTTGT 206378
||||| || |||||
Sbjct 15468 GACTCTGCATCTTGT 15482
Score = 105 bits (116), Expect = 2e-17
Identities = 149/207 (72%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| ||| | || || || |||||||| || || || || | ||| || | ||
Sbjct 15745 AAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGTGATACTATTGAGAAT 15804
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| |||||||| ||| || ||| ||| | | || ||
Sbjct 15805 GTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATT 15863
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||||||||||||||| | ||| || | ||||||||| |||||||||||||
Sbjct 15864 CGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACATCCAGAAAGAGTC 15923
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
|| | || |||||| || | || ||
Sbjct 15924 AACCTTACATCTTGTTCTGCGCCTACG 15950
Score = 89.7 bits (98), Expect = 1e-12
Identities = 75/92 (82%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
||||| || ||||| ||||||||||||| || ||||||| || ||| | ||||||||||
Sbjct 15482 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 15423
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||| || ||||| || | ||||||||
Sbjct 15422 AACTGCTTACCAGCGAATATCAAACGTTGTTG 15391
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
||||| || ||||| ||||||||||||| || || |||| || ||| | ||||||||||
Sbjct 15710 ACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCC 15651
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||| || ||||| || | ||||||||
Sbjct 15650 AACTGCTTACCAGCGAATATCAAACGTTGTTG 15619
>seq13659
Length=5019
Score = 109 bits (120), Expect = 1e-18
Identities = 147/201 (73%), Gaps = 3/201 (1%)
Strand=Plus/Minus
Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238
|||| ||| || | |||||||| ||||| || ||||| || || | ||| || |
Sbjct 1316 TTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGTGATACTATT 1257
Query 206239 GAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297
|| || ||||| || ||| ||||| |||||||| ||| || ||| ||| | |
Sbjct 1256 GAGAATGTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTT 1198
Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357
|| ||||| || |||||||||||||||||| | ||| || | || |||||| | |||||
Sbjct 1197 GATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATTCAGAA 1138
Query 206358 AGAGTCTACTCTTCACCTTGT 206378
|||||| ||||| || |||||
Sbjct 1137 AGAGTCGACTCTGCATCTTGT 1117
Score = 100 bits (110), Expect = 7e-16
Identities = 148/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| ||| | || || || |||||||| || || || || | ||| || | ||
Sbjct 1082 AAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGTGATACTATTGAGAAT 1023
Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303
|| ||||| || ||| ||||| |||||||| ||| || ||| ||| | | || ||
Sbjct 1022 GTGAAAGCGAA-GATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATATT 964
Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363
||| || |||||||||||||||||| | ||| || | || |||||| |||||||||||||
Sbjct 963 CGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTC 904
Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390
|| | || |||||| || | || ||
Sbjct 903 AACCTTACATCTTGTTCTGCGCCTACG 877
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
||||| || ||||| ||||||||||| | || ||||||| || ||| | ||||||||||
Sbjct 1117 ACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1176
Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||| || ||||| || | ||||||||
Sbjct 1177 AACTGCTTACCAGCGAATATCAAACGTTGTTG 1208
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
|| || | || |||||| || | || ||||||||||||| || ||||||| || |||
Sbjct 877 CGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA 936
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| ||||||||||| |||||| || ||||| || | ||||||||
Sbjct 937 CGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTG 980
>seq6368
Length=18664
Score = 89.7 bits (98), Expect = 1e-12
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || |||||||| || || | ||||| || | |||| ||| | ||| ||
Sbjct 645 AAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCTGATACAATAGAAGCA 704
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| || |||||||| |||||||| || || ||| ||| | || || ||
Sbjct 705 GTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAACAACGTCTAATTTTT 764
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || || || ||||||||||| | ||| | |||| || || | ||||| || ||
Sbjct 765 GCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAATATACAGAAGGAATCA 824
Query 206365 ACTCTTCACCTTGT 206378
|| ||||| |||||
Sbjct 825 ACACTTCATCTTGT 838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181467156744955
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |