Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq13659 107 2e-18
seq6368 100 3e-16
seq4612 89.7 5e-13
>seq13659
Length=5019
Score = 107 bits (118), Expect = 2e-18
Identities = 157/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||| | ||||| ||| | ||||| | |||||||||| || ||||||||||| || ||
Sbjct 876 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 935
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| |||||| | ||| ||||| | | || | ||| ||||| || ||||| || ||
Sbjct 936 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 995
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
|||||| || || || ||||| | || | |||||| | ||||| || || |
Sbjct 996 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 1055
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||| | ||| |||||||||| || || | || || |||||
Sbjct 1056 CGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| |||||||||||||| || ||||| |||||| | ||| ||||| |
Sbjct 1132 GACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 1191
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| || | ||| ||||| || ||||| || |||||||| || || || |||||
Sbjct 1192 AATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 1251
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | |||||| | ||||| || || | ||| | ||| || || |||| || |||
Sbjct 1252 TTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTT 1311
Query 132110 ATGAAAATCTGCAT 132123
| || || |||||
Sbjct 1312 ACAAAGATTTGCAT 1325
>seq6368
Length=18664
Score = 100 bits (110), Expect = 3e-16
Identities = 142/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||| || || || || || |||||| | || || |||||| || ||||| || |
Sbjct 825 TTGATTCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAG 766
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
| | |||||||| ||||| ||||| || |||||||||||||| |||||| || |
Sbjct 765 CAAAAATTAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTATCTTGAATTTTCGCCTT-A 707
Query 132048 ACTG-TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106
|||| ||| | ||||| | ||||| ||||| | || | ||||| || || || ||
Sbjct 706 ACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTC 647
Query 132107 TTTATGAAAATCTGCAT 132123
|| | ||||||||||||
Sbjct 646 TTCACGAAAATCTGCAT 630
>seq4612
Length=25615
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|||||||| || ||||||||||| || ||||| |||||| | ||| ||||| |
Sbjct 15467 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCG 15408
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
| || | ||| ||||| || ||||| || |||||||| || || || |||||
Sbjct 15407 AATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACA 15348
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | |||||| | ||||| || || | ||| | ||| |||||||||| || ||
Sbjct 15347 TTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTC 15288
Query 132110 ATGAAAATCTGCAT 132123
| || || |||||
Sbjct 15287 ACAAAGATTTGCAT 15274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476472059317800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |