Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4326 174 2e-38 seq973 98.7 1e-15 >seq4326 Length=27076 Score = 174 bits (192), Expect = 2e-38 Identities = 354/522 (68%), Gaps = 23/522 (4%) Strand=Plus/Plus Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508 || ||||| | |||||| ||||| ||||| || ||||||||||| || | | Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195 Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGAT 39568 ||||||||||| || | || |||||| | ||| || || |||||| ||||||| || Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTGA- 16254 Query 39569 GTTACTACCTCATCAC--TCGGTGGATGCA------ATAA-ATGTTTAAACATTAAGCAG 39619 |||| ||| || |||| | |||| ||||||||| | || || Sbjct 16255 --------CTCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAATAATAGACAA 16306 Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679 ||||| ||||||||||| || || |||||||| |||||||| || ||| | |||||| Sbjct 16307 GCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCA 16366 Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739 ||||| ||||| || || || ||||| ||||| || || || ||||||||||| | Sbjct 16367 GGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACA 16426 Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATC 39796 ||||| ||||||||||| |||| | | ||| | || | | | || | ||| Sbjct 16427 CCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATC 16486 Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC-TATAGCATTAAA 39855 || | |||||| | ||| || || ||||||| | ||| | ||| || || || Sbjct 16487 CAATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTA-AGTTGCTTATGGCGTTGAA 16545 Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915 |||| | | |||| | ||||| | |||||||| ||||| | | |||||||| Sbjct 16546 GAGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTC 16605 Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957 || || || || || || || ||||| | || ||||| || Sbjct 16606 AGAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCA 16647 >seq973 Length=64032 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863 || |||||| |||| ||||||||||||| || || | || ||| || ||| Sbjct 13386 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATG 13445 Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923 || | || || || || || || ||||||| || | ||||| |||||| || || Sbjct 13446 AACATTTATTCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATC 13505 Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983 || || || ||||| ||||| ||| |||| | | |||||||| || || | || | Sbjct 13506 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGG 13565 Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAG 70043 | |||||| || ||||| | ||| || || || || || |||||||||||||| | Sbjct 13566 TTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACAT 13625 Query 70044 CAGATTGTATGT 70055 ||| || || || Sbjct 13626 CAGGTTATACGT 13637 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || |||||||| || || || || || ||| |||||| ||||||| || ||||| Sbjct 11993 TACATTGTTTCAAATATACGTTTGTTAAGGTCTGCCGCTTCTGGACTATCAAAGGGATAC 12052 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 |||||| ||||| ||||||||| || |||||||||||||| || || | ||| | | Sbjct 12053 CTCAAAAGACAAAATGTATCTGCCAAACCTTGAACCCCAATACCAATTGGCCGATGACGC 12112 Query 69136 TTATTTGAACT 69146 ||||||| || Sbjct 12113 ATATTTGATCT 12123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686708265562200