Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 174 2e-38
seq973 98.7 1e-15
>seq4326
Length=27076
Score = 174 bits (192), Expect = 2e-38
Identities = 354/522 (68%), Gaps = 23/522 (4%)
Strand=Plus/Plus
Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508
|| ||||| | |||||| ||||| ||||| || ||||||||||| || | |
Sbjct 16136 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 16195
Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGAT 39568
||||||||||| || | || |||||| | ||| || || |||||| ||||||| ||
Sbjct 16196 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTGA- 16254
Query 39569 GTTACTACCTCATCAC--TCGGTGGATGCA------ATAA-ATGTTTAAACATTAAGCAG 39619
|||| ||| || |||| | |||| ||||||||| | || ||
Sbjct 16255 --------CTCAACACGTTCCTTGGAAGGCTTTTTGATAATATGTTTAAATAATAGACAA 16306
Query 39620 GCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCA 39679
||||| ||||||||||| || || |||||||| |||||||| || ||| | ||||||
Sbjct 16307 GCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCA 16366
Query 39680 GGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATG 39739
||||| ||||| || || || ||||| ||||| || || || ||||||||||| |
Sbjct 16367 GGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACA 16426
Query 39740 CCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATC 39796
||||| ||||||||||| |||| | | ||| | || | | | || | |||
Sbjct 16427 CCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATC 16486
Query 39797 CACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTC-TATAGCATTAAA 39855
|| | |||||| | ||| || || ||||||| | ||| | ||| || || ||
Sbjct 16487 CAATCTAATGCCCACTGAGCCTTTTTTGCAACACAAGTTA-AGTTGCTTATGGCGTTGAA 16545
Query 39856 GAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTC 39915
|||| | | |||| | ||||| | |||||||| ||||| | | ||||||||
Sbjct 16546 GAGAAAGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTC 16605
Query 39916 TGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACA 39957
|| || || || || || || ||||| | || ||||| ||
Sbjct 16606 AGAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCA 16647
>seq973
Length=64032
Score = 98.7 bits (108), Expect = 1e-15
Identities = 173/252 (69%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 69804 AATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACT 69863
|| |||||| |||| ||||||||||||| || || | || ||| || |||
Sbjct 13386 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATG 13445
Query 69864 AATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTC 69923
|| | || || || || || || ||||||| || | ||||| |||||| || ||
Sbjct 13446 AACATTTATTCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATC 13505
Query 69924 ATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 69983
|| || || ||||| ||||| ||| |||| | | |||||||| || || | || |
Sbjct 13506 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGG 13565
Query 69984 ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAG 70043
| |||||| || ||||| | ||| || || || || || |||||||||||||| |
Sbjct 13566 TTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACAT 13625
Query 70044 CAGATTGTATGT 70055
||| || || ||
Sbjct 13626 CAGGTTATACGT 13637
Score = 87.8 bits (96), Expect = 2e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075
|| |||||||| || || || || || ||| |||||| ||||||| || |||||
Sbjct 11993 TACATTGTTTCAAATATACGTTTGTTAAGGTCTGCCGCTTCTGGACTATCAAAGGGATAC 12052
Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135
|||||| ||||| ||||||||| || |||||||||||||| || || | ||| | |
Sbjct 12053 CTCAAAAGACAAAATGTATCTGCCAAACCTTGAACCCCAATACCAATTGGCCGATGACGC 12112
Query 69136 TTATTTGAACT 69146
||||||| ||
Sbjct 12113 ATATTTGATCT 12123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686708265562200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |