Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 163 2e-35
seq12369 143 2e-29
seq4630 89.7 4e-13
>seq4326
Length=27076
Score = 163 bits (180), Expect = 2e-35
Identities = 594/930 (64%), Gaps = 50/930 (5%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|| ||| | || || || |||| || || | ||||| | || || || || ||
Sbjct 16887 TTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCT 16828
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819
|| |||||||| | ||||| || |||||| | ||||| | ||||||| | |
Sbjct 16827 TCTTTTTGGACTGTGGAAGAGGTGGATTTGTCCAAAGATCTCATACATTGGGAGTCGCTC 16768
Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879
|| ||| ||||| ||||| | || || || || ||||| ||||| |||||
Sbjct 16767 AAGGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCTTTCTTTGCGGCGAGTGACGGA 16708
Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939
|| || || || | | || || |||||||| || | ||||| | ||
Sbjct 16707 ATTGTACTCGAGAACCTCCTAGAACGCTTCAGCCAAGAAGTCCAGATCCCAGAGGTTCGT 16648
Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999
|| ||||||||| | || || || || || |||||||| || ||||||||| | | |
Sbjct 16647 TGCTTTTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATTA 16588
Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA-GAAAC 44058
|| ||||| ||||||||||| | || | | | | || || || ||| | |||
Sbjct 16587 ATTGATACATACATCAAAGACTCCAAAGAAAGGGACTTTCTCTTCAACGCCATAAGCAAC 16528
Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGA 44115
|| || | | || | || || | ||||| | | ||||| | |||| ||
Sbjct 16527 TTAACTTGTGTTGCAAAA-AAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAATC 16469
Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175
| |||||| |||||| | | || ||||||| |||||||| |||||||||| ||
Sbjct 16468 TACTTTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTCTTTTCTGGTAG 16409
Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235
|| || || ||||| ||| | |||||||||||| | |||||||| || | ||| ||
Sbjct 16408 CTTCGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAA 16349
Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA 44295
||| ||||| ||| | || ||||| ||||||| ||||| ||||| | ||| || | |
Sbjct 16348 TGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTATTTAAACA 16289
Query 44296 TCTAGGAGACGATAAGCCTT-CATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAA 44354
| | | | ||||||| || | || | | | || | |||||| ||
Sbjct 16288 TAT---TATCAAAAAGCCTTCCAAGGAACGTGTTGAGTCA-ATAATAAGAGAGGCGGTTC 16233
Query 44355 AGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT---G 44411
|||||||| || ||| | || ||| |||| || | ||||| |||||||||
Sbjct 16232 TAATAGAACAGGAGTTTTTATCAGAAGCTCTACCAGTCAGCTTAATTGGAATGAATTGCA 16173
Query 44412 AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTT 44471
||| ||||| || || ||||||| || ||||| | |||| | ||||| ||||
Sbjct 16172 AAC---TGATGTGTCAGTACATTGAATTTATCGCAGACAGGCTACTAGTTGAACTTGGTT 16116
Query 44472 GCGATAA-------ACACTATATTGTA---------------------------CAAAAC 44497
|| || | | | | || || | ||
Sbjct 16115 ATGAAAAGGTTTGTAAATTTTCTTTTAATCGTTTCCGTTTAGATGTATCATTCTGACAAT 16056
Query 44498 CCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGC 44557
|| ||||| |||||||||||||| || | ||||| || |||||||||||||| || ||
Sbjct 16055 CCTTTTGACTTTATGGAAAATATATCAATCGAAGGAAAGACAAACTTTTTTGAGAAGCGA 15996
Query 44558 GTTGGAGAATATCAGCGAATGGGCGTCATG 44587
||||| |||||||| || || ||||||
Sbjct 15995 GTTGGTGAATATCAACGTGCTGGTGTCATG 15966
>seq12369
Length=6463
Score = 143 bits (158), Expect = 2e-29
Identities = 189/258 (73%), Gaps = 8/258 (3%)
Strand=Plus/Plus
Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395
|||||||| ||||| || |||| || || ||||| ||| ||| |||||| |||| ||
Sbjct 4591 AAACATGTCCGTGGTATTCTGCTATACGGTCCACCTGGTACTGGTAAAACACTAATGGCA 4650
Query 19396 AGAGAACTTAGTAAATTACTTACAAAAC---AACCTCCCAAAATTGTAAATGGTCCTGAA 19452
|| || || ||||| | |||| || ||||| |||||||| ||||||||
Sbjct 4651 CGACAAATTGGTAAAATGCTTAATGCACGTGAACCT---AAAATTGTCAATGGTCCAAGT 4707
Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512
|| ||| |||||||||| ||| |||| |||| ||| | || || || ||||| |||
Sbjct 4708 ATATTAGATAAATATGTCGGTGAATCTGAAGCGAATATCCGTAAATTATTCGCTGATGCT 4767
Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAA-GTTCTTTGCACATTATAATACTAGATGA 19571
||||||||| ||||||| | ||| |||||| | | ||||| ||||| ||| | |||||
Sbjct 4768 GAAGAAGAAGAAAAACGCAT-GGGGGCAAAATCTGCATTGCATATTATTATATTTGATGA 4826
Query 19572 ATTGGACGCAATCTGTAA 19589
| | || || || |||||
Sbjct 4827 AATTGATGCTATTTGTAA 4844
>seq4630
Length=25536
Score = 89.7 bits (98), Expect = 4e-13
Identities = 90/117 (77%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197
||| || || || ||||| || || || ||||||||| | | || ||||||||||| ||
Sbjct 12831 GGGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCA 12772
Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTA 41254
|||| ||||||||||||||| || |||||||| | || |||| ||||||||
Sbjct 12771 TATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTA 12715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397342868496775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |