Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4326 163 2e-35 seq12369 143 2e-29 seq4630 89.7 4e-13 >seq4326 Length=27076 Score = 163 bits (180), Expect = 2e-35 Identities = 594/930 (64%), Gaps = 50/930 (5%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | || || || |||| || || | ||||| | || || || || || Sbjct 16887 TTCGTCCTTTTCCCCATAGAATACCACGATGTCTGGCATTTTTATAAGAAGGCTGTAGCT 16828 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || |||||||| | ||||| || |||||| | ||||| | ||||||| | | Sbjct 16827 TCTTTTTGGACTGTGGAAGAGGTGGATTTGTCCAAAGATCTCATACATTGGGAGTCGCTC 16768 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 || ||| ||||| ||||| | || || || || ||||| ||||| ||||| Sbjct 16767 AAGGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCTTTCTTTGCGGCGAGTGACGGA 16708 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || || || || | | || || |||||||| || | ||||| | || Sbjct 16707 ATTGTACTCGAGAACCTCCTAGAACGCTTCAGCCAAGAAGTCCAGATCCCAGAGGTTCGT 16648 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 || ||||||||| | || || || || || |||||||| || ||||||||| | | | Sbjct 16647 TGCTTTTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAATGTACTCTTTATTA 16588 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA-GAAAC 44058 || ||||| ||||||||||| | || | | | | || || || ||| | ||| Sbjct 16587 ATTGATACATACATCAAAGACTCCAAAGAAAGGGACTTTCTCTTCAACGCCATAAGCAAC 16528 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGA 44115 || || | | || | || || | ||||| | | ||||| | |||| || Sbjct 16527 TTAACTTGTGTTGCAAAA-AAGGCTCAGTGGGCATTAGATTGGATTGGAGATTCCAAATC 16469 Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 | |||||| |||||| | | || ||||||| |||||||| |||||||||| || Sbjct 16468 TACTTTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTTTTCTTTTCTGGTAG 16409 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 || || || ||||| ||| | |||||||||||| | |||||||| || | ||| || Sbjct 16408 CTTCGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACTGTCTTTTAGCAA 16349 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA 44295 ||| ||||| ||| | || ||||| ||||||| ||||| ||||| | ||| || | | Sbjct 16348 TGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCTTGTCTATTATTTAAACA 16289 Query 44296 TCTAGGAGACGATAAGCCTT-CATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAA 44354 | | | | ||||||| || | || | | | || | |||||| || Sbjct 16288 TAT---TATCAAAAAGCCTTCCAAGGAACGTGTTGAGTCA-ATAATAAGAGAGGCGGTTC 16233 Query 44355 AGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT---G 44411 |||||||| || ||| | || ||| |||| || | ||||| ||||||||| Sbjct 16232 TAATAGAACAGGAGTTTTTATCAGAAGCTCTACCAGTCAGCTTAATTGGAATGAATTGCA 16173 Query 44412 AACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTT 44471 ||| ||||| || || ||||||| || ||||| | |||| | ||||| |||| Sbjct 16172 AAC---TGATGTGTCAGTACATTGAATTTATCGCAGACAGGCTACTAGTTGAACTTGGTT 16116 Query 44472 GCGATAA-------ACACTATATTGTA---------------------------CAAAAC 44497 || || | | | | || || | || Sbjct 16115 ATGAAAAGGTTTGTAAATTTTCTTTTAATCGTTTCCGTTTAGATGTATCATTCTGACAAT 16056 Query 44498 CCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGC 44557 || ||||| |||||||||||||| || | ||||| || |||||||||||||| || || Sbjct 16055 CCTTTTGACTTTATGGAAAATATATCAATCGAAGGAAAGACAAACTTTTTTGAGAAGCGA 15996 Query 44558 GTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||||| |||||||| || || |||||| Sbjct 15995 GTTGGTGAATATCAACGTGCTGGTGTCATG 15966 >seq12369 Length=6463 Score = 143 bits (158), Expect = 2e-29 Identities = 189/258 (73%), Gaps = 8/258 (3%) Strand=Plus/Plus Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||||| || |||| || || ||||| ||| ||| |||||| |||| || Sbjct 4591 AAACATGTCCGTGGTATTCTGCTATACGGTCCACCTGGTACTGGTAAAACACTAATGGCA 4650 Query 19396 AGAGAACTTAGTAAATTACTTACAAAAC---AACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || || || ||||| | |||| || ||||| |||||||| |||||||| Sbjct 4651 CGACAAATTGGTAAAATGCTTAATGCACGTGAACCT---AAAATTGTCAATGGTCCAAGT 4707 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || ||| |||||||||| ||| |||| |||| ||| | || || || ||||| ||| Sbjct 4708 ATATTAGATAAATATGTCGGTGAATCTGAAGCGAATATCCGTAAATTATTCGCTGATGCT 4767 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAA-GTTCTTTGCACATTATAATACTAGATGA 19571 ||||||||| ||||||| | ||| |||||| | | ||||| ||||| ||| | ||||| Sbjct 4768 GAAGAAGAAGAAAAACGCAT-GGGGGCAAAATCTGCATTGCATATTATTATATTTGATGA 4826 Query 19572 ATTGGACGCAATCTGTAA 19589 | | || || || ||||| Sbjct 4827 AATTGATGCTATTTGTAA 4844 >seq4630 Length=25536 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 41138 GGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACA 41197 ||| || || || ||||| || || || ||||||||| | | || ||||||||||| || Sbjct 12831 GGGTCTTGGTGTACCGTTCAATATTGCAAGTTATGCTTTATTAACATATATGATTGCTCA 12772 Query 41198 CGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTA 41254 |||| ||||||||||||||| || |||||||| | || |||| |||||||| Sbjct 12771 TATTACTGGTTTAAAACCTGGTGAGTTCGTTCACACAATTGGCGATGCGCATATTTA 12715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397342868496775