Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq6368 167 3e-36
seq4612 161 1e-34
seq13659 154 2e-32
>seq6368
Length=18664
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| ||||| || || ||||| || || || |||||| | | |
Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | | | ||||| |||||||| || || || || || || ||||||||
Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||||||||||||||| || ||||| || |||| || || || | |||||||||
Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 809
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || |||||||| || |||||||| ||| | |||||||| |||||
Sbjct 810 ATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGG 856
>seq4612
Length=25615
Score = 161 bits (178), Expect = 1e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| |||||| | || || ||||| || || | ||||||||| | |
Sbjct 15273 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15332
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| ||| |||| || || || || ||||| || || |||||||| |||||
Sbjct 15333 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15392
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | || || ||||||||||| | || |||| ||||| || | ||||| ||
Sbjct 15393 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 15452
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||| || || || ||||| ||||| ||| | ||||| || ||||||
Sbjct 15453 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGA 15501
Score = 156 bits (172), Expect = 5e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| |||||| | || || ||||| || || | ||||||||| | |
Sbjct 15501 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15560
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| ||| |||| || || || || ||||| || || |||||||| |||||
Sbjct 15561 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15620
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | || || ||||||||||| | || |||| ||||| || | || || ||
Sbjct 15621 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAA 15680
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||| || || || ||||| ||||| ||| | ||||| || ||||||
Sbjct 15681 CATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGA 15729
Score = 136 bits (150), Expect = 5e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| |||||| | || || ||||| || || | ||||||||| | |
Sbjct 15729 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15788
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| ||| |||| || || || || ||||| || || |||||||| |||||
Sbjct 15789 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 15848
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | || || ||||||||||| | || |||| ||||| || | || || ||
Sbjct 15849 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAA 15908
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || | ||||| || |||| || || || ||
Sbjct 15909 CATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGG 15956
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501
||||| | ||||| ||| || |||||| |||| ||| |||| || || || ||||||
Sbjct 10510 ATTACGTTGGAGGTGGAGCCAAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAGGAC 10569
Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561
|| || || |||||||| ||| | || ||| | || || ||||||||||| | || |||
Sbjct 10570 AAAGAAGGTATTCCTCCTGACAAACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGAT 10629
Query 27562 GAT 27564
|||
Sbjct 10630 GAT 10632
>seq13659
Length=5019
Score = 154 bits (170), Expect = 2e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||||||||| ||||| | || || ||||| ||||| | ||||||||| | ||
Sbjct 1325 ATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 1266
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| |||| || || || || ||||| || || |||||||| |||||
Sbjct 1265 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 1206
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| | || || ||||||||||| | || |||| ||||| || | ||||| ||
Sbjct 1205 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 1146
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| || || || || ||||| ||||| ||| | ||||| || ||||||
Sbjct 1145 ATTCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGA 1098
Score = 141 bits (156), Expect = 1e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| |||||| | || || ||||| || || | ||||||||| | |
Sbjct 1098 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 1039
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| ||| |||| || || || || ||||| || || |||||||| |||||
Sbjct 1038 TGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCA 979
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | || || ||||||||||| | || |||| ||||| || | ||||| ||
Sbjct 978 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 919
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || | ||||| || |||| || || || ||
Sbjct 918 CATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGG 871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570143905007600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |