Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4612 118 9e-22 seq13659 113 4e-20 seq6368 107 2e-18 >seq4612 Length=25615 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | || || | || || || || Sbjct 15730 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15789 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 15790 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15849 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| |||| ||| || || || |||||||| | || | || ||||||||| Sbjct 15850 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAAC 15909 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||||||||| | ||| |||| | || || ||||| Sbjct 15910 ATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGGCAT 15959 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | || || | || || || || Sbjct 15502 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15561 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 15562 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15621 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| |||| ||| || || || |||||||| | || | || ||||||||| Sbjct 15622 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAAC 15681 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | ||| | || ||||| || Sbjct 15682 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 15731 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | || || | || || || || Sbjct 15274 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 15333 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 15334 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 15393 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| |||| ||| || || || |||||||| | || | || || |||||| Sbjct 15394 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 15453 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || |||||||| | ||| | || | ||| | || ||||| || Sbjct 15454 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 15503 >seq13659 Length=5019 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || |||| || ||| | || || | || || || || Sbjct 1097 ATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAGT 1038 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 1037 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 978 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| |||| ||| || || || |||||||| | || | || || |||||| Sbjct 977 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 918 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||||||||| | ||| |||| | || || ||||| Sbjct 917 ATCCAGAAAGAGTCAACCTTACATCTTGTTCTGCGCCTACGTGGAGGCAT 868 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||| || |||| || ||| | ||||| | || || || || Sbjct 1325 ATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 1266 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| || || |||||||||||||| || || || || ||| Sbjct 1265 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 1206 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| |||| ||| || || || |||||||| | || | || || |||||| Sbjct 1205 CAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 1146 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || |||||||| | ||| | || | ||| | || ||||| || Sbjct 1145 ATTCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAAT 1096 >seq6368 Length=18664 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || |||| || || ||||| || || | Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || || ||||||||||| ||||||||||| ||||| || ||| Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | || ||||||||| ||||||| | || ||||||| || || Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 809 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 || || ||||| || || | ||| | || | ||| | || ||||| |||| Sbjct 810 ATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGGTATAA 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434791431009600