Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 168 2e-36
seq13659 161 2e-34
seq6368 122 2e-22
>seq4612
Length=25615
Score = 168 bits (186), Expect = 2e-36
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || ||||| |||||||| |||||||| ||||| | || || | |||||||
Sbjct 15713 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCT 15654
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || ||||| || | ||||||||||||||||||| ||||| |||||
Sbjct 15653 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15594
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||| || || || || ||| |||||||| | |||||||||
Sbjct 15593 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15534
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || | ||||| ||||| | ||||||
Sbjct 15533 TTACCAGTCAACGTCTTCACAAAGATTTGCATT 15501
Score = 163 bits (180), Expect = 7e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || ||||| |||||||| |||||||| || || | || || | |||||||
Sbjct 15485 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 15426
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || ||||| || | ||||||||||||||||||| ||||| |||||
Sbjct 15425 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15366
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||| || || || || ||| |||||||| | |||||||||
Sbjct 15365 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15306
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
|| || || | ||||| ||||| | ||||||
Sbjct 15305 TTACCAGTCAACGTCTTCACAAAGATTTGCATT 15273
Score = 156 bits (172), Expect = 1e-32
Identities = 170/226 (75%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || ||||| || | || |||||||| |||||||| ||||| | ||
Sbjct 15954 TCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAG 15895
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||||||||||| |||||| || ||||| || | |||||||||||||||||||
Sbjct 15894 AGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAAT 15835
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||| ||||| |||||||| |||||| || || || || ||| ||||||||
Sbjct 15834 ACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTC 15775
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
| ||||||||||| || || | ||||| ||||| | ||||||
Sbjct 15774 TAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729
Score = 91.5 bits (100), Expect = 3e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 210958 CATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCT 211017
||||||||| |||||| || ||||| || | ||||||| ||||||||||| ||||| |
Sbjct 10630 CATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTTGTCAGGAGGAATACCTTCTT 10571
Query 211018 TGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
||||||||||||| |||||| || || || || |||
Sbjct 10570 TGTCCTGGATCTTCGCTTTCACATTCTCAATAGTATCA 10533
>seq13659
Length=5019
Score = 161 bits (178), Expect = 2e-34
Identities = 163/212 (77%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || ||||| |||||||| || ||||| || || | || || | |||||||
Sbjct 1114 AGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCT 1173
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| |||||| || ||||| || | ||||||||||||||||||| ||||| |||||
Sbjct 1174 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 1233
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||| || || || || ||| |||||||| | || ||||||
Sbjct 1234 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTC 1293
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || | ||||||||||| | |||||
Sbjct 1294 TTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325
Score = 150 bits (166), Expect = 4e-31
Identities = 169/226 (75%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | || ||||| || | || |||||||| |||||||| || || | ||
Sbjct 873 TCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAG 932
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
|| | ||||||||||| |||||| || ||||| || | |||||||||||||||||||
Sbjct 933 AGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAAT 992
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
||||| ||||| |||||||| |||||| || || || || ||| ||||||||
Sbjct 993 ACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTC 1052
Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
| ||||||||||| || || | ||||| ||||| | ||||||
Sbjct 1053 TAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 1098
>seq6368
Length=18664
Score = 122 bits (134), Expect = 2e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | |||||||| ||||| || || || || || || ||||| || | ||| ||
Sbjct 851 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 792
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||||| || ||||| || || || || ||||||||||| || || | ||
Sbjct 791 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 732
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||| || || || || || || || ||| || || |||| ||||| || ||
Sbjct 731 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 672
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || |||||||| || ||||| || || | ||||||
Sbjct 671 GGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158805140064575
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |