Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6368 89.7 4e-13 seq4612 87.8 2e-12 seq13659 84.2 2e-11 >seq6368 Length=18664 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || ||||||||||| |||| ||| |||||| | || || || |||||||| ||||| Sbjct 820 TCCTTCTGTATATTATAGTCGGAAAGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAA 761 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || ||||| || ||||| |||||| | || ||||| || |||||| || | | Sbjct 760 ATTAGACGTTGTTGGTCTGGTGGG-ATGCCTTCTTTATCTTGAATTTTCGCCTTAACTGC 702 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||| | ||| || || | || ||| |||||||||| || || || || Sbjct 701 TTCTATTGTATCAGCAGGCTCAACTTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCAC 642 Query 39273 AAAGATTTGCATC 39285 || || |||||| Sbjct 641 GAAAATCTGCATC 629 >seq4612 Length=25615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | || ||| | || | ||||| || |||||| || || || ||||| Sbjct 15960 CATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATC 15901 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || ||| | || || | ||| || || || ||||| | ||| || ||||| | Sbjct 15900 AGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGG 15841 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | |||||||| ||| ||| ||| | || | | ||||| || | ||| Sbjct 15840 AGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTC 15781 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | |||||| | || || |||| ||| || |||||||||||||| Sbjct 15780 AACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 15730 >seq13659 Length=5019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| | || ||| | || | ||||| || |||||| || || || || || Sbjct 867 CATGCCTCCACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTC 926 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || ||| | || || | ||| || || || ||||| | ||| || ||||| | Sbjct 927 AGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGG 986 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | | |||||||| ||| ||| ||| | || | | ||||| || | ||| Sbjct 987 AGGAATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTC 1046 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | |||||| | || || |||| ||| || |||||||||||||| Sbjct 1047 AACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCAT 1097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429423334543115