Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq6368 125 5e-24
seq4612 105 5e-18
seq13659 100 2e-16
>seq6368
Length=18664
Score = 125 bits (138), Expect = 5e-24
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || ||||||||||| || || || |||||||| | |
Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | ||| | | || |||||| || |||||||| | || ||||| |||
Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| |||| ||||| ||||||||||||||||| | ||| ||| | ||| || ||
Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 809
Query 23791 ATACAAAAAGAGTCCACATTACAT 23814
||||| || || || ||| | |||
Sbjct 810 ATACAGAAGGAATCAACACTTCAT 833
>seq4612
Length=25615
Score = 105 bits (116), Expect = 5e-18
Identities = 152/212 (72%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || | || || || |||||||| | || ||||| | |
Sbjct 15729 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15788
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| ||| |||| ||| | ||| | || | | |||||||||||| | || || || |
Sbjct 15789 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 15847
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||| ||||| ||||| || || || || ||||||| | ||| ||| | |||||||
Sbjct 15848 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACA 15907
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||| || |||||||| || |||||| | |||
Sbjct 15908 ACATCCAGAAAGAGTCAACCTTACATCTTGTT 15939
Score = 95.1 bits (104), Expect = 8e-15
Identities = 142/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || | || || || |||||||| | || ||||| | |
Sbjct 15501 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15560
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| ||| |||| ||| | ||| | || | | |||||||||||| | || || || |
Sbjct 15561 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 15619
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||| ||||| ||||| || || || || ||||||| | ||| ||| | |||||||
Sbjct 15620 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACA 15679
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || |||||||| ||
Sbjct 15680 ACATCCAGAAAGAGTCGAC 15698
Score = 91.5 bits (100), Expect = 1e-13
Identities = 141/199 (71%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || | || || || |||||||| | || ||||| | |
Sbjct 15273 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15332
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| ||| |||| ||| | ||| | || | | |||||||||||| | || || || |
Sbjct 15333 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 15391
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||| ||||| ||||| || || || || ||||||| | ||| ||| | || ||||
Sbjct 15392 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 15451
Query 23789 ACATACAAAAAGAGTCCAC 23807
|||| || |||||||| ||
Sbjct 15452 ACATCCAGAAAGAGTCGAC 15470
>seq13659
Length=5019
Score = 100 bits (110), Expect = 2e-16
Identities = 151/212 (71%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || | || || || |||||||| | || ||||| | |
Sbjct 1098 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 1039
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| ||| |||| ||| | ||| | || | | |||||||||||| | || || || |
Sbjct 1038 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 980
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||| ||||| ||||| || || || || ||||||| | ||| ||| | || ||||
Sbjct 979 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 920
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820
|||| || |||||||| || |||||| | |||
Sbjct 919 ACATCCAGAAAGAGTCAACCTTACATCTTGTT 888
Score = 89.7 bits (98), Expect = 3e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || || | || ||||| ||||| || | || ||||| | |
Sbjct 1325 ATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 1266
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| ||| |||| ||| | ||| | || | | |||||||||||| | || || || ||
Sbjct 1265 GATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACCA 1207
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| ||||| || || || || ||||||| | ||| ||| | || |||||
Sbjct 1206 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 1147
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || |||||||| ||
Sbjct 1146 CATTCAGAAAGAGTCGAC 1129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337913389264340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |