Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6368 125 5e-24 seq4612 105 5e-18 seq13659 100 2e-16 >seq6368 Length=18664 Score = 125 bits (138), Expect = 5e-24 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || ||||||||||| || || || |||||||| | | Sbjct 630 ATGCAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 689 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | ||| | | || |||||| || |||||||| | || ||||| ||| Sbjct 690 GATACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAA 749 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| |||| ||||| ||||||||||||||||| | ||| ||| | ||| || || Sbjct 750 CAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAAT 809 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 ||||| || || || ||| | ||| Sbjct 810 ATACAGAAGGAATCAACACTTCAT 833 >seq4612 Length=25615 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || ||||| | | Sbjct 15729 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15788 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 15789 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 15847 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| ||||| || || || || ||||||| | ||| ||| | ||||||| Sbjct 15848 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACA 15907 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || |||||||| || |||||| | ||| Sbjct 15908 ACATCCAGAAAGAGTCAACCTTACATCTTGTT 15939 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || ||||| | | Sbjct 15501 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15560 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 15561 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 15619 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| ||||| || || || || ||||||| | ||| ||| | ||||||| Sbjct 15620 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACA 15679 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 15680 ACATCCAGAAAGAGTCGAC 15698 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || ||||| | | Sbjct 15273 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 15332 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 15333 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 15391 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| ||||| || || || || ||||||| | ||| ||| | || |||| Sbjct 15392 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 15451 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 15452 ACATCCAGAAAGAGTCGAC 15470 >seq13659 Length=5019 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || | || || || |||||||| | || ||||| | | Sbjct 1098 AATGCAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGAGCCTAG 1039 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || | Sbjct 1038 TGATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACC 980 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| ||||| ||||| || || || || ||||||| | ||| ||| | || |||| Sbjct 979 AACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACA 920 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| || |||||||| || |||||| | ||| Sbjct 919 ACATCCAGAAAGAGTCAACCTTACATCTTGTT 888 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || || | || ||||| ||||| || | || ||||| | | Sbjct 1325 ATGCAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGAGCCTAGT 1266 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | || | | |||||||||||| | || || || || Sbjct 1265 GATACTATTGAGAATGTGAAAGCGAAGA-TCCAAGACAAAGAAGGTATTCCTCCTGACCA 1207 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| ||||| || || || || ||||||| | ||| ||| | || ||||| Sbjct 1206 ACAACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAA 1147 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || |||||||| || Sbjct 1146 CATTCAGAAAGAGTCGAC 1129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337913389264340