Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq4612 159 8e-34 seq13659 145 2e-29 seq6368 113 1e-19 seq534 87.8 4e-12 >seq4612 Length=25615 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || ||||| || ||||| |||| |||||||| | || ||| | |||||| Sbjct 15713 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCT 15654 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || | ||||||||||| || ||||||||||| |||||| Sbjct 15653 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15594 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || || || || | || || ||||||||||||||| Sbjct 15593 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15534 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | || | ||||||| Sbjct 15533 TTACCAGTCAACGTCTTCACAAAGATTTGCATT 15501 Score = 154 bits (170), Expect = 4e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || ||||| || ||||| |||| ||||| || | || ||| | |||||| Sbjct 15485 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 15426 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || | ||||||||||| || ||||||||||| |||||| Sbjct 15425 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15366 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || || || || | || || ||||||||||||||| Sbjct 15365 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15306 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | || | ||||||| Sbjct 15305 TTACCAGTCAACGTCTTCACAAAGATTTGCATT 15273 Score = 150 bits (166), Expect = 4e-31 Identities = 167/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| ||||| || | || || ||||| |||| |||||||| | || ||| Sbjct 15951 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGT 15892 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| |||||||| || | ||||||||||| || |||||||| Sbjct 15891 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 15832 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| |||||| || || || || | || || ||||| Sbjct 15831 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 15772 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||||||| || ||||| || || | || | ||||||| Sbjct 15771 CGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729 >seq13659 Length=5019 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| ||||| || | || || ||||| |||| ||||| || | || ||| Sbjct 876 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 935 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | |||||| |||||||| || | ||||||||||| || |||||||| Sbjct 936 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 995 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| |||||| || || || || | || || ||||| Sbjct 996 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 1055 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||||||||| || ||||| || || | || | ||||||| Sbjct 1056 CGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 1098 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || ||||| || ||||| || | ||||| || | || ||| | |||||| Sbjct 1114 AGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCT 1173 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| |||||||| || | ||||||||||| || ||||||||||| |||||| Sbjct 1174 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 1233 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || || || || | || || || ||||| |||||| Sbjct 1234 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTC 1293 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || |||| || | |||||| Sbjct 1294 TTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325 >seq6368 Length=18664 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | |||||||| || || || ||||| || || | ||| || |||| | ||| Sbjct 851 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 792 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || || || ||||| || || || ||||||||||| || || || || Sbjct 791 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 732 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||| || || ||| || ||||| || || || | | || || |||| Sbjct 731 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 672 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| | || || | ||| | ||||| Sbjct 671 GGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630 >seq534 Length=79311 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || |||||||| ||||||||||| ||||| || || || ||||| |||||||| Sbjct 46693 GAAAATCTGCCCATCAGTTATAGAGATAACGTTTGTTGGAATGTATGCAGATACATCACC 46634 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || || || || | || || | |||||||||||| || || ||| Sbjct 46633 AGCCTGAGTCTCAATGACTGGAAGGGCTGTTAGTGAACCGCCTCCA 46588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192174351808370