Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq4612 159 8e-34
seq13659 145 2e-29
seq6368 113 1e-19
seq534 87.8 4e-12
>seq4612
Length=25615
Score = 159 bits (176), Expect = 8e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || ||||| || ||||| |||| |||||||| | || ||| | ||||||
Sbjct 15713 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCT 15654
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| |||||||| || | ||||||||||| || ||||||||||| ||||||
Sbjct 15653 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15594
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| || || || || | || || |||||||||||||||
Sbjct 15593 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15534
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || ||||| || || | || | |||||||
Sbjct 15533 TTACCAGTCAACGTCTTCACAAAGATTTGCATT 15501
Score = 154 bits (170), Expect = 4e-32
Identities = 162/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || ||||| || ||||| |||| ||||| || | || ||| | ||||||
Sbjct 15485 AGGACAAGATGCAGAGTCGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 15426
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| |||||||| || | ||||||||||| || ||||||||||| ||||||
Sbjct 15425 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 15366
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| || || || || | || || |||||||||||||||
Sbjct 15365 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTC 15306
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| || ||||| || || | || | |||||||
Sbjct 15305 TTACCAGTCAACGTCTTCACAAAGATTTGCATT 15273
Score = 150 bits (166), Expect = 4e-31
Identities = 167/223 (75%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| ||||| || | || || ||||| |||| |||||||| | || |||
Sbjct 15951 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAATCAGACAGAGT 15892
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| |||||||| || | ||||||||||| || ||||||||
Sbjct 15891 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 15832
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| |||||||||||||| |||||| || || || || | || || |||||
Sbjct 15831 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 15772
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|||||||||||| || ||||| || || | || | |||||||
Sbjct 15771 CGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 15729
>seq13659
Length=5019
Score = 145 bits (160), Expect = 2e-29
Identities = 166/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| ||||| || | || || ||||| |||| ||||| || | || |||
Sbjct 876 ACGTAGGCGCAGAACAAGATGTAAGGTTGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 935
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | |||||| |||||||| || | ||||||||||| || ||||||||
Sbjct 936 ACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACC 995
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| |||||||||||||| |||||| || || || || | || || |||||
Sbjct 996 TTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCTAA 1055
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|||||||||||| || ||||| || || | || | |||||||
Sbjct 1056 CGTGATCGTCTTACCAGTCAACGTCTTCACAAAGATTTGCATT 1098
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || ||||| || ||||| || | ||||| || | || ||| | ||||||
Sbjct 1114 AGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCT 1173
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||| |||||||| || | ||||||||||| || ||||||||||| ||||||
Sbjct 1174 TCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCT 1233
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| |||||| || || || || | || || || ||||| ||||||
Sbjct 1234 TGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTC 1293
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || ||||| || |||| || | ||||||
Sbjct 1294 TTTCCTGTCAATGTCTTTACAAAGATTTGCAT 1325
>seq6368
Length=18664
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
|||||| | |||||||| || || || ||||| || || | ||| || |||| | |||
Sbjct 851 ACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAAAGAGT 792
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
|| |||||||| || || || ||||| || || || ||||||||||| || || || ||
Sbjct 791 TCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGGATGCC 732
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||| || ||||| || || ||| || ||||| || || || | | || || ||||
Sbjct 731 TTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAACTTCTAG 672
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || || ||||| | || || | ||| | |||||
Sbjct 671 GGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630
>seq534
Length=79311
Score = 87.8 bits (96), Expect = 4e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| || || |||||||| ||||||||||| ||||| || || || ||||| ||||||||
Sbjct 46693 GAAAATCTGCCCATCAGTTATAGAGATAACGTTTGTTGGAATGTATGCAGATACATCACC 46634
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575
|| || || || | || || | |||||||||||| || || |||
Sbjct 46633 AGCCTGAGTCTCAATGACTGGAAGGGCTGTTAGTGAACCGCCTCCA 46588
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192174351808370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |