Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 241 1e-58
>seq4326
Length=27076
Score = 241 bits (266), Expect = 1e-58
Identities = 487/717 (68%), Gaps = 18/717 (3%)
Strand=Plus/Plus
Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCAC 4441
||| || | |||||| || ||||| | ||| |||| ||| || ||||||||||| || ||
Sbjct 16138 GTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTGAC 16197
Query 4442 AGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTT 4501
||||| || | || |||||||| |||||||| || || ||| | ||||| |
Sbjct 16198 TGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTC 16257
Query 4502 TATTTTATCTTTAGATGGTTTATT--TACTAAGTATCCAAACAATAAACACGCAAAATCA 4559
| || || || || || || || || || | ||| |||| ||| || ||||||
Sbjct 16258 AACACGTTCCTTGGAAGGCTTTTTGATAATATGTTT--AAATAATAGACAAGCGAAATCA 16315
Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619
||||| | ||||||||||| || || | ||| || ||| | | ||| ||||| | |
Sbjct 16316 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 16375
Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679
|||| || |||||||| |||||||| || || ||||||||||| | ||||| ||
Sbjct 16376 CCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACT 16435
Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG---TCTTTAATCCATTTT 4736
|| ||||| || | ||| || | || | | | |||| ||| |||||| | |
Sbjct 16436 GCTGCAAAAGCAATTAAACGTTCTGCAAAAG---TAGATTTGGAATCTCCAATCCAATCT 16492
Query 4737 AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---AT 4793
|||||||| | ||| ||||| ||| || | | || ||| ||||| || | |
Sbjct 16493 AATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAG 16552
Query 4794 TTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852
| |||| || ||| ||||| || || || || |||| || |||||||||||
Sbjct 16553 TCCCTTTCTT----TGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGA 16608
Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912
|| ||||| || ||||| ||||| | || |||||||| | | | |||| | || ||
Sbjct 16609 GTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGGAC 16668
Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972
||| | | || | ||||| | ||| ||| ||| || |||||||| || ||||| ||
Sbjct 16669 TTCTTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAA 16728
Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAA 5032
|| || || | ||||| || | |||| || ||| || | ||| || |
Sbjct 16729 AGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAG 16788
Query 5033 ATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089
|||||| | ||||| || ||||| ||||||||||| || ||| | || || || ||
Sbjct 16789 ATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426928045002215
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |