Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4326 241 1e-58 >seq4326 Length=27076 Score = 241 bits (266), Expect = 1e-58 Identities = 487/717 (68%), Gaps = 18/717 (3%) Strand=Plus/Plus Query 4382 GTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCAC 4441 ||| || | |||||| || ||||| | ||| |||| ||| || ||||||||||| || || Sbjct 16138 GTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTGAC 16197 Query 4442 AGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTT 4501 ||||| || | || |||||||| |||||||| || || ||| | ||||| | Sbjct 16198 TGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTC 16257 Query 4502 TATTTTATCTTTAGATGGTTTATT--TACTAAGTATCCAAACAATAAACACGCAAAATCA 4559 | || || || || || || || || || | ||| |||| ||| || |||||| Sbjct 16258 AACACGTTCCTTGGAAGGCTTTTTGATAATATGTTT--AAATAATAGACAAGCGAAATCA 16315 Query 4560 CAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAA 4619 ||||| | ||||||||||| || || | ||| || ||| | | ||| ||||| | | Sbjct 16316 CAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGA 16375 Query 4620 CCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACG 4679 |||| || |||||||| |||||||| || || ||||||||||| | ||||| || Sbjct 16376 CCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACT 16435 Query 4680 GCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG---TCTTTAATCCATTTT 4736 || ||||| || | ||| || | || | | | |||| ||| |||||| | | Sbjct 16436 GCTGCAAAAGCAATTAAACGTTCTGCAAAAG---TAGATTTGGAATCTCCAATCCAATCT 16492 Query 4737 AATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA---AT 4793 |||||||| | ||| ||||| ||| || | | || ||| ||||| || | | Sbjct 16493 AATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAG 16552 Query 4794 TTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGA 4852 | |||| || ||| ||||| || || || || |||| || ||||||||||| Sbjct 16553 TCCCTTTCTT----TGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGA 16608 Query 4853 ATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAAC 4912 || ||||| || ||||| ||||| | || |||||||| | | | |||| | || || Sbjct 16609 GTGAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGGAC 16668 Query 4913 TTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAA 4972 ||| | | || | ||||| | ||| ||| ||| || |||||||| || ||||| || Sbjct 16669 TTCTTGGCTGAAGCGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAA 16728 Query 4973 CGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAA 5032 || || || | ||||| || | |||| || ||| || | ||| || | Sbjct 16729 AGCTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAG 16788 Query 5033 ATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTA 5089 |||||| | ||||| || ||||| ||||||||||| || ||| | || || || || Sbjct 16789 ATCTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 16845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426928045002215