Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4326 223 5e-53 seq973 107 3e-18 >seq4326 Length=27076 Score = 223 bits (246), Expect = 5e-53 Identities = 590/905 (65%), Gaps = 47/905 (5%) Strand=Plus/Plus Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 |||||||||||| || || ||||| ||||| || || || ||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 47912 CATAAAATCAAATGGATTAACTGCATTATA--------------------------AAtt 47945 |||||| ||||| ||||| | | || ||| |||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 47946 t--------ttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATC 47997 | ||| | | || | ||| | || || ||||| | ||||| || || Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 47998 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACT 48057 ||||| || ||||||||||| || | | ||||||||||| || | | ||||| Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 48058 CTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGG----T 48113 | ||||| || || || || |||||| || || ||||| || | Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 16280 Query 48114 GGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTA 48173 |||| | ||||||||| | || ||| || ||||||||||| || ||||| |||||| Sbjct 16281 TGATA----ATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 16336 Query 48174 CTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAAT 48233 || |||||||| || ||| | || || ||||| || || ||||| || ||||| ||| Sbjct 16337 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 16396 Query 48234 ATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTC 48293 || || ||||| ||||||||||| | ||||| || || ||||| || | | | Sbjct 16397 ATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 16456 Query 48294 TCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTT 48350 ||| | || | | || | | | ||||| | |||||| | |||||| || Sbjct 16457 TCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 16516 Query 48351 ACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAAC 48409 ||||||| | ||| | ||| || || |||||||||| |||| ||| ||||| | Sbjct 16517 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575 Query 48410 GTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469 ||| ||||| ||||| | | |||||||| ||||||||||| || || || ||||| | Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635 Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529 || ||||| || | | |||| |||||| || || | || ||||| | || Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695 Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589 ||| ||| ||||| ||||| || ||||| || ||||| || | || |||| Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755 Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649 ||| | || | ||| | ||| |||||| || | ||| || ||||| | Sbjct 16756 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGG 48709 |||||||| || || | || || ||||| | || ||| | ||| ||||| || || Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875 Query 48710 GAAAA 48714 ||||| Sbjct 16876 GAAAA 16880 >seq973 Length=64032 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271 || ||| || ||| |||||||||||||| || || | ||| ||| || ||| Sbjct 13386 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATG 13445 Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATC 78331 || ||| || || || || || | |||||||| | || || |||||| ||||| Sbjct 13446 AACATTTATTCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATC 13505 Query 78332 GTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 78391 ||| || || |||||||| || || |||| | | |||||||| || || | || | Sbjct 13506 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGG 13565 Query 78392 ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448 | |||||| || ||||| | |||||| || ||||| ||||||||||||||||| Sbjct 13566 TTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 13622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694466000127200