Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 223 5e-53
seq973 107 3e-18
>seq4326
Length=27076
Score = 223 bits (246), Expect = 5e-53
Identities = 590/905 (65%), Gaps = 47/905 (5%)
Strand=Plus/Plus
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
|||||||||||| || || ||||| ||||| || || || ||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 47912 CATAAAATCAAATGGATTAACTGCATTATA--------------------------AAtt 47945
|||||| ||||| ||||| | | || ||| ||||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 47946 t--------ttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATC 47997
| ||| | | || | ||| | || || ||||| | ||||| || ||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 47998 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACT 48057
||||| || ||||||||||| || | | ||||||||||| || | | |||||
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 48058 CTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGG----T 48113
| ||||| || || || || |||||| || || ||||| || |
Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 16280
Query 48114 GGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTA 48173
|||| | ||||||||| | || ||| || ||||||||||| || ||||| ||||||
Sbjct 16281 TGATA----ATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTA 16336
Query 48174 CTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAAT 48233
|| |||||||| || ||| | || || ||||| || || ||||| || ||||| |||
Sbjct 16337 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 16396
Query 48234 ATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTC 48293
|| || ||||| ||||||||||| | ||||| || || ||||| || | | |
Sbjct 16397 ATAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGT 16456
Query 48294 TCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTT 48350
||| | || | | || | | | ||||| | |||||| | |||||| ||
Sbjct 16457 TCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 16516
Query 48351 ACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAAC 48409
||||||| | ||| | ||| || || |||||||||| |||| ||| ||||| |
Sbjct 16517 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575
Query 48410 GTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAA 48469
||| ||||| ||||| | | |||||||| ||||||||||| || || || ||||| |
Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635
Query 48470 TCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATT 48529
|| ||||| || | | |||| |||||| || || | || ||||| | ||
Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695
Query 48530 CTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTT 48589
||| ||| ||||| ||||| || ||||| || ||||| || | || ||||
Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755
Query 48590 TTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 48649
||| | || | ||| | ||| |||||| || | ||| || ||||| |
Sbjct 16756 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815
Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGG 48709
|||||||| || || | || || ||||| | || ||| | ||| ||||| || ||
Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875
Query 48710 GAAAA 48714
|||||
Sbjct 16876 GAAAA 16880
>seq973
Length=64032
Score = 107 bits (118), Expect = 3e-18
Identities = 166/237 (70%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 78212 AATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACT 78271
|| ||| || ||| |||||||||||||| || || | ||| ||| || |||
Sbjct 13386 AAGACCATTTGATTCTCCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATG 13445
Query 78272 AATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATC 78331
|| ||| || || || || || | |||||||| | || || |||||| |||||
Sbjct 13446 AACATTTATTCCAATACCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATC 13505
Query 78332 GTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATG 78391
||| || || |||||||| || || |||| | | |||||||| || || | || |
Sbjct 13506 GTAAATGCCTTCTATACTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGG 13565
Query 78392 ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA 78448
| |||||| || ||||| | |||||| || ||||| |||||||||||||||||
Sbjct 13566 TTTGGGAGTTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 13622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694466000127200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |