Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4326 192 8e-44 seq973 93.3 6e-14 >seq4326 Length=27076 Score = 192 bits (212), Expect = 8e-44 Identities = 587/905 (65%), Gaps = 47/905 (5%) Strand=Plus/Plus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 ||| |||||||| || || ||||| ||||| || || || ||||| | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 46401 CATAAAATCAAACGGATTA---------------------GTAAC-ATTATAA----Att 46434 |||||| ||||| ||||| | ||| |||| || ||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 46435 t--------ttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACG 46486 | ||| | | || | ||| | || || ||||| | ||||| || ||| Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 46487 TTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACT 46546 ||||| || ||||||||||| || | |||| |||||||| || | | ||||| Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 46547 CTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGAT 46606 | ||||| || || || || |||||| || || ||||| || | Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 16280 Query 46607 GCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAA 46666 || | ||||||||| | || ||| || ||||||||||| || ||||| |||||||| | Sbjct 16281 TGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGA 16340 Query 46667 TTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAG 46726 ||||||| || ||| | || |||||||| || || || || || ||||| ||||||| Sbjct 16341 TTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAG 16400 Query 46727 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786 | ||||| ||||||||||| | ||||| || || || || || | | | ||| Sbjct 16401 CTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTG 16460 Query 46787 CGTAACTGGCATCATTATGAA--TCCA--CC--TTTGA-GCCCAATCAGCCTTTTTCTTT 46839 | || | | ||| ||| |||| || | | | ||||| | ||||||||| Sbjct 16461 CAAAAGTAG----ATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 16516 Query 46840 ACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAAC 46898 ||||||| | ||| | ||| || || |||||||||| |||| | ||||| | Sbjct 16517 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575 Query 46899 ATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAA 46958 |||||||| ||||| | | |||||||| || ||||| || || ||||| ||||| | Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635 Query 46959 TCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATT 47018 || ||||| || | | || | ||||| || ||| | || ||||| | || Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695 Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078 ||| || ||||| ||||| || ||||| || || || || | || |||| Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755 Query 47079 TTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 47138 ||| | | || | ||| | ||| |||||| || | ||| || ||||| | Sbjct 16756 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815 Query 47139 TGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGG 47198 ||||| || || || | || || ||||| | || ||| | ||| | |||| || || Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875 Query 47199 AAAAA 47203 |||| Sbjct 16876 GAAAA 16880 >seq973 Length=64032 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882 ||||||||||||| || || | ||| || || ||| || | || || || Sbjct 13402 CCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATGAACATTTATTCCAATA 13461 Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942 || || || ||||||| || | ||||| |||||| || || || ||||| |||||| Sbjct 13462 CCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCTTCTATA 13521 Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 ||||| || |||| | | |||||||| || || | || | | |||||| || Sbjct 13522 CTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTTCCAGCG 13581 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA 77043 ||||| | ||| || || ||||| || |||||||||||||| Sbjct 13582 TTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 13622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712726267713600