Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq4326 192 8e-44
seq973 93.3 6e-14
>seq4326
Length=27076
Score = 192 bits (212), Expect = 8e-44
Identities = 587/905 (65%), Gaps = 47/905 (5%)
Strand=Plus/Plus
Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400
||| |||||||| || || ||||| ||||| || || || ||||| | ||||||||||||
Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040
Query 46401 CATAAAATCAAACGGATTA---------------------GTAAC-ATTATAA----Att 46434
|||||| ||||| ||||| | ||| |||| || |||
Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100
Query 46435 t--------ttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACG 46486
| ||| | | || | ||| | || || ||||| | ||||| || |||
Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160
Query 46487 TTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACT 46546
||||| || ||||||||||| || | |||| |||||||| || | | |||||
Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220
Query 46547 CTTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGAT 46606
| ||||| || || || || |||||| || || ||||| || |
Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTTT 16280
Query 46607 GCATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAA 46666
|| | ||||||||| | || ||| || ||||||||||| || ||||| |||||||| |
Sbjct 16281 TGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTACTGA 16340
Query 46667 TTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAG 46726
||||||| || ||| | || |||||||| || || || || || ||||| |||||||
Sbjct 16341 TTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAG 16400
Query 46727 CCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTC 46786
| ||||| ||||||||||| | ||||| || || || || || | | | |||
Sbjct 16401 CTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTG 16460
Query 46787 CGTAACTGGCATCATTATGAA--TCCA--CC--TTTGA-GCCCAATCAGCCTTTTTCTTT 46839
| || | | ||| ||| |||| || | | | ||||| | |||||||||
Sbjct 16461 CAAAAGTAG----ATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCA 16516
Query 46840 ACACAAGGCATTGTTTC-TATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAAC 46898
||||||| | ||| | ||| || || |||||||||| |||| | ||||| |
Sbjct 16517 ACACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 16575
Query 46899 ATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAA 46958
|||||||| ||||| | | |||||||| || ||||| || || ||||| ||||| |
Sbjct 16576 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 16635
Query 46959 TCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATT 47018
|| ||||| || | | || | ||||| || ||| | || ||||| | ||
Sbjct 16636 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAGGAGGTT 16695
Query 47019 CTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT 47078
||| || ||||| ||||| || ||||| || || || || | || ||||
Sbjct 16696 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGACG 16755
Query 47079 TTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGC 47138
||| | | || | ||| | ||| |||||| || | ||| || ||||| |
Sbjct 16756 TTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCAC 16815
Query 47139 TGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGG 47198
||||| || || || | || || ||||| | || ||| | ||| | |||| || ||
Sbjct 16816 AGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGGTATTCTATGGG 16875
Query 47199 AAAAA 47203
||||
Sbjct 16876 GAAAA 16880
>seq973
Length=64032
Score = 93.3 bits (102), Expect = 6e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 76823 CCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATT 76882
||||||||||||| || || | ||| || || ||| || | || || ||
Sbjct 13402 CCATTTGTTCCAGCTATGTAGGTCCCAAGACTGCGGATGTTATGAACATTTATTCCAATA 13461
Query 76883 CCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATA 76942
|| || || ||||||| || | ||||| |||||| || || || ||||| ||||||
Sbjct 13462 CCCCCAGCATTTTTAGATATAATTGCACATTCTTTCAACGTATCGTAAATGCCTTCTATA 13521
Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002
||||| || |||| | | |||||||| || || | || | | |||||| ||
Sbjct 13522 CTATCGTCTTTCATAGTGATGAGAAAACAACTTGAAAGCTGTGGTTTGGGAGTTCCAGCG 13581
Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGA 77043
||||| | ||| || || ||||| || ||||||||||||||
Sbjct 13582 TTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGA 13622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712726267713600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |