Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq4326 230 2e-55 >seq4326 Length=27076 Score = 230 bits (254), Expect = 2e-55 Identities = 569/855 (67%), Gaps = 54/855 (6%) Strand=Plus/Plus Query 23220 TTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTC 23279 ||||||||| ||||| || | || ||||| |||||||| || || | |||||||||||| Sbjct 15981 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 16040 Query 23280 CATAAAATCAAATGGATT---AGAAGTAT---TATATACAGCT----TTACATGATAATT 23329 |||||| ||||| ||||| |||| || | || || | ||| | || |||| Sbjct 16041 CATAAAGTCAAAAGGATTGTCAGAATGATACATCTAAACGGAAACGATTAAAAGAAAATT 16100 Query 23330 ------CCTTTAAA------------------AGCCTATCTGCTACAAATTCAATATATT 23365 ||||| | ||||| ||||| | ||||||||| || | Sbjct 16101 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 16160 Query 23366 GACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATA 23425 ||||||||| | | || || || |||| | ||||| | || || |||| || Sbjct 16161 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 16220 Query 23426 GTTTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGAT 23485 | ||| || ||| || ||| | |||||| ||| | ||| | | | || | Sbjct 16221 CCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCT---TGGAAGGCT 16277 Query 23486 ATTTTA-AATAC--TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTAC 23542 ||| | |||| ||||| |||| ||| || |||||||||||||| ||||| || |||| Sbjct 16278 TTTTGATAATATGTTTAAATAATAGACAAGCGAAATCACAATGTAGTCCTTCGTCTCTAC 16337 Query 23543 TAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATA 23602 | || |||||||| ||| | | ||| ||||| | |||||||| |||| ||| |||| Sbjct 16338 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 16397 Query 23603 TTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTG 23662 | || || || || |||||||||| ||| || || || ||||| || | | |||| Sbjct 16398 TAGCTGCGAAGCTACCAGAAAAGAAAACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 16457 Query 23663 TACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTA 23722 |||| || | || |||| |||||| | | || ||| | |||||| |||| Sbjct 16458 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTT---TTTTG 16514 Query 23723 CACACTCAATT---GTTTC-AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTT 23778 || || ||| | ||| | || || || |||||||| |||||| ||| | Sbjct 16515 CA-ACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTG 16573 Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || ||||||||||||| |||| ||||||||||| |||||||| || ||||| ||||| Sbjct 16574 ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGC 16633 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATC-TTTTAGCTAA 23897 | ||||||||| || | | | || | | || || || | || | || ||| | Sbjct 16634 ATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCTTGGCTGAAGCGTTCTAG-GAG 16692 Query 23898 ATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATG 23957 || ||| ||||| || ||||| || ||||||||||| | || || ||| ||||| Sbjct 16693 GTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATG 16752 Query 23958 TCTTTCATCA--GTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 24015 | ||| || ||| | | ||||| | | |||||| || ||||| || || Sbjct 16753 ACGTTCCCCAACCTTG--AGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCT 16810 Query 24016 TCAACTGTCCAAAAA 24030 || || ||||||||| Sbjct 16811 TCCACAGTCCAAAAA 16825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521335758097000