Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq13659 89.7 4e-13
seq4612 89.7 4e-13
>seq13659
Length=5019
Score = 89.7 bits (98), Expect = 4e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||| || || |||||||| || | || || | || |||| |||||| || || ||
Sbjct 1134 CTCTTTCTGAATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 1193
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||||| || || || | ||| | |||||| || || |||||| |||| | |
Sbjct 1194 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACAT 1252
Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
|| | || || || | || ||||||| ||||||||||||||| || | ||||| |
Sbjct 1253 TCTCAATAGTATCACTAGGCTCAACCTCCAACGTAATCGTCTTTCCTGTCAATGTCTTTA 1312
Query 44325 CGAAGATTTGCAT 44337
| |||||||||||
Sbjct 1313 CAAAGATTTGCAT 1325
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||| || ||||||||||| || | || || | || |||| |||||| || || ||
Sbjct 906 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 965
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||||| || || || | ||| | |||||| || || |||||| |||| | |
Sbjct 966 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACAT 1024
Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
|| | || || || | || ||||| | ||| |||||||| || || | |||||||
Sbjct 1025 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 1084
Query 44325 CGAAGATTTGCAT 44337
| |||||||||||
Sbjct 1085 CAAAGATTTGCAT 1097
>seq4612
Length=25615
Score = 89.7 bits (98), Expect = 4e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||| || |||||||||||||| | || || | || |||| |||||| || || ||
Sbjct 15693 CTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15634
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||||| || || || | ||| | |||||| || || |||||| |||| | |
Sbjct 15633 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACAT 15575
Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
|| | || || || | || ||||| | ||| |||||||| || || | |||||||
Sbjct 15574 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 15515
Query 44325 CGAAGATTTGCAT 44337
| |||||||||||
Sbjct 15514 CAAAGATTTGCAT 15502
Score = 89.7 bits (98), Expect = 4e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||| || |||||||||||||| | || || | || |||| |||||| || || ||
Sbjct 15921 CTCTTTCTGGATGTTGTAATCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15862
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||||| || || || | ||| | |||||| || || |||||| |||| | |
Sbjct 15861 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACAT 15803
Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
|| | || || || | || ||||| | ||| |||||||| || || | |||||||
Sbjct 15802 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 15743
Query 44325 CGAAGATTTGCAT 44337
| |||||||||||
Sbjct 15742 CAAAGATTTGCAT 15730
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205
||| || ||||||||||| || | || || | || |||| |||||| || || ||
Sbjct 15465 CTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAACTGCTTACCAGCGAA 15406
Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265
|||||||| || || || | ||| | |||||| || || |||||| |||| | |
Sbjct 15405 TATCAAACGTTGTTGGTCAGGAGGAATACCTTCTTTGTCTTGGATCTTC-GCTTTCACAT 15347
Query 44266 TC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
|| | || || || | || ||||| | ||| |||||||| || || | |||||||
Sbjct 15346 TCTCAATAGTATCACTAGGCTCAACCTCTAACGTGATCGTCTTACCAGTCAACGTCTTCA 15287
Query 44325 CGAAGATTTGCAT 44337
| |||||||||||
Sbjct 15286 CAAAGATTTGCAT 15274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359887932670035
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |