Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09- 25] 23,355 sequences; 367,396,528 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6368 132 1e-25 seq4612 131 4e-25 seq13659 125 2e-23 >seq6368 Length=18664 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || |||||||| || ||||| || || || | || Sbjct 633 CAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCTGAT 692 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || |||||||| ||||| || ||||| ||| Sbjct 693 ACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAACAA 752 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || ||||| || ||||||||| | |||||| |||| ||||| | Sbjct 753 CGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAATATA 812 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||||||||| |||||||| Sbjct 813 CAGAAGGAATCAACACTTCATCTTGT 838 >seq4612 Length=25615 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | ||||| || || || Sbjct 15505 CAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGA--GCCTAGTG 15562 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 15563 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 15622 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || ||||| || || ||| | ||||||||| | ||||| | ||||| ||| Sbjct 15623 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACA 15682 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 15683 TCCAGAAAGAGTCGACTCTGCATCTTGT 15710 Score = 129 bits (142), Expect = 1e-24 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | ||||| || || || Sbjct 15733 CAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGA--GCCTAGTG 15790 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 15791 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 15850 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || ||||| || || ||| | ||||||||| | ||||| | ||||| ||| Sbjct 15851 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACA 15910 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| ||||| ||||| | ||||||||| || Sbjct 15911 TCCAGAAAGAGTCAACCTTACATCTTGTTCTG 15942 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | ||||| || || || Sbjct 15277 CAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGA--GCCTAGTG 15334 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 15335 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 15394 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || ||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 15395 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 15454 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||||||||| Sbjct 15455 TCCAGAAAGAGTCGACTCTGCATCTTGT 15482 >seq13659 Length=5019 Score = 125 bits (138), Expect = 2e-23 Identities = 156/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || | || || || |||||||| | ||||| || || || Sbjct 1094 CAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGA--GCCTAGTG 1037 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 1036 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 977 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || ||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 976 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 917 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| ||||| ||||| | ||||||||| || Sbjct 916 TCCAGAAAGAGTCAACCTTACATCTTGTTCTG 885 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || || || || | |||||||| ||||| || | ||||| || || || Sbjct 1322 CAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGA--GCCTAGTG 1265 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| | Sbjct 1264 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 1205 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| | || ||||| || || ||| | ||||||||| | ||||| | || || ||| Sbjct 1204 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 1145 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||||| || || ||||||||||| Sbjct 1144 TTCAGAAAGAGTCGACTCTGCATCTTGT 1117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203371000365870