Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6368 132 1e-25
seq4612 131 4e-25
seq13659 125 2e-23
>seq6368
Length=18664
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||||||||| || || || |||||||| || ||||| || || || | ||
Sbjct 633 CAGATTTTCGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCTGAT 692
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| || |||||||| ||||| || ||||| |||
Sbjct 693 ACAATAGAAGCAGTTAAGGCGAAAATTCAAGATAAAGAAGGCATCCCACCAGACCAACAA 752
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || ||||| || ||||||||| | |||||| |||| ||||| |
Sbjct 753 CGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAATATA 812
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || ||||||||||| ||||||||
Sbjct 813 CAGAAGGAATCAACACTTCATCTTGT 838
>seq4612
Length=25615
Score = 131 bits (144), Expect = 4e-25
Identities = 155/208 (75%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| || ||||| || | || || || |||||||| | ||||| || || ||
Sbjct 15505 CAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGA--GCCTAGTG 15562
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| |
Sbjct 15563 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 15622
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| | || ||||| || || ||| | ||||||||| | ||||| | ||||| |||
Sbjct 15623 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACA 15682
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || |||||||||||
Sbjct 15683 TCCAGAAAGAGTCGACTCTGCATCTTGT 15710
Score = 129 bits (142), Expect = 1e-24
Identities = 157/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| || ||||| || | || || || |||||||| | ||||| || || ||
Sbjct 15733 CAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGA--GCCTAGTG 15790
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| |
Sbjct 15791 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 15850
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| | || ||||| || || ||| | ||||||||| | ||||| | ||||| |||
Sbjct 15851 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGATTACAACA 15910
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|||| ||||| ||||| | ||||||||| ||
Sbjct 15911 TCCAGAAAGAGTCAACCTTACATCTTGTTCTG 15942
Score = 127 bits (140), Expect = 5e-24
Identities = 154/208 (74%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| || ||||| || | || || || |||||||| | ||||| || || ||
Sbjct 15277 CAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGA--GCCTAGTG 15334
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| |
Sbjct 15335 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 15394
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| | || ||||| || || ||| | ||||||||| | ||||| | || || |||
Sbjct 15395 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 15454
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || |||||||||||
Sbjct 15455 TCCAGAAAGAGTCGACTCTGCATCTTGT 15482
>seq13659
Length=5019
Score = 125 bits (138), Expect = 2e-23
Identities = 156/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| || ||||| || | || || || |||||||| | ||||| || || ||
Sbjct 1094 CAAATCTTTGTGAAGACGTTGACTGGTAAGACGATCACGTTAGAGGTTGA--GCCTAGTG 1037
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| |
Sbjct 1036 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 977
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| | || ||||| || || ||| | ||||||||| | ||||| | || || |||
Sbjct 976 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 917
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|||| ||||| ||||| | ||||||||| ||
Sbjct 916 TCCAGAAAGAGTCAACCTTACATCTTGTTCTG 885
Score = 122 bits (134), Expect = 2e-22
Identities = 153/208 (74%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| || || || || | |||||||| ||||| || | ||||| || || ||
Sbjct 1322 CAAATCTTTGTAAAGACATTGACAGGAAAGACGATTACGTTGGAGGTTGA--GCCTAGTG 1265
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
| || || ||||| || ||| ||||| || ||||||||||| || ||||| ||||| |
Sbjct 1264 ATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAAC 1205
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
|||| | || ||||| || || ||| | ||||||||| | ||||| | || || |||
Sbjct 1204 AACGTTTGATATTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACA 1145
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
| || ||||| || || |||||||||||
Sbjct 1144 TTCAGAAAGAGTCGACTCTGCATCTTGT 1117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203371000365870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |