Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Schistosoma_20margrebowiei_20[genbank_20GCA_5F000951435.1_202014-09-
25] 23,355 sequences; 367,396,528 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq13659 113 4e-20
seq6368 93.3 4e-14
>seq13659
Length=5019
Score = 113 bits (124), Expect = 4e-20
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || |||||||| | || |||||||| || ||| ||||||||||| ||||| ||
Sbjct 1099 CCACCACGTAGACGAAGGACAAGATGCAGAGTCGACTCTTTCTGAATGTTGTAGTCAGAC 1158
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || | |||||| || |||||||||| || |||||||| | |||
Sbjct 1159 AGAGTACGTCCATCTTCCAACTGCTTACCAGCGAATATCAAACGTTGTTGGTCAGGAGGA 1218
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815
| | || ||||| ||| || |||| | | ||| || || | ||| |||
Sbjct 1219 ATACCTTCTTTGTCTTGGATCTTCGCTTTCACATTCTCAATAGTATCACTAGGCTCAACC 1278
Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTTATCGA 41870
|||| ||| ||||| || || |||| |||||||| || || ||||| | ||||
Sbjct 1279 TCCAACGTAATCGTCTTTCCTGTCAATGTCTTTACAAAGATTTGCATCTCTTCGA 1333
>seq6368
Length=18664
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || ||||| || || |||||||| || |||||||||||
Sbjct 856 CCACCACGAAGACGGAGGACAAGATGAAGTGTTGATTCCTTCTGTATATTATAGTCGGAA 797
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || || || || ||||| || || || || || |||||||| | ||
Sbjct 796 AGAGTTCGTCCATCTTCCAGTTGTTTGCCAGCAAAAATTAGACGTTGTTGGTCTGGTGGG 737
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || || ||| | ||| |||| || | ||| | | | || || | ||| ||
Sbjct 736 ATGC-CTTCTTTATCTTGAATTTTCGCCTTAACTGCTTCTATTGTATCAGCAGGCTCAAC 678
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | ||||| ||||| ||||| || ||||| ||||||||||||||
Sbjct 677 TTCTAGGGTTATAGTTTTTCCCGTAAGTGTCTTCACGAAAATCTGCAT 630
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462169036126000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |