Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1181 226 3e-54 >seq1181 Length=30581 Score = 226 bits (250), Expect = 3e-54 Identities = 527/777 (68%), Gaps = 26/777 (3%) Strand=Plus/Minus Query 16775 TACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCG 16834 || || ||||| | | || || || || | |||||| || || || ||||| | || | Sbjct 10150 TAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTG 10091 Query 16835 CAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACA 16894 || |||||||| || | | || || |||||||| | ||||| || ||||| | | Sbjct 10090 CAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGA 10031 Query 16895 ACCGCTTC-CTTAATAAT-ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTT 16952 ||||| || |||| || | ||| |||| ||||||| ||| || | | ||| ||||| Sbjct 10030 ACCGCCTCTCTTATTATTGACT--CAACACGTTCCTTGGAAGGCTTTTTGATAATATGTT 9973 Query 16953 TAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAG 17012 |||| | ||||| |||||||| ||||||| ||| |||||||| ||||| | ||| || Sbjct 9972 TAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGC 9913 Query 17013 AAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACC 17072 ||| | || || ||||| ||||||||||| | ||| ||||| || ||||| | Sbjct 9912 TAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTAC 9853 Query 17073 CAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGT 17132 ||||||| || | ||| || || | |||||| || ||||| ||||| || | || | Sbjct 9852 CAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAG--- 9796 Query 17133 CTTTG---TTACGAATCCATTTCTGCACCCACTCGGC--TTTTTGCTTTATGCAATCCAT 17187 |||| | | |||||| | |||||| || ||||||| | ||| | Sbjct 9795 ATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC--AACACAAGTTA- 9739 Query 17188 CGTTTC-TATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATC 17244 ||| | |||||| || | | || || |||| | || | ||| | || || ||||| Sbjct 9738 AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCT-TTGGA-GTCTTTGATGTATGTATC 9681 Query 17245 GATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAA 17304 || | || ||||||||| ||||| || ||||| || |||||||| | || ||||| Sbjct 9680 AATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCATCCCATAAAA 9621 Query 17305 GCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCAC 17364 ||| || | || | || || |||||| | ||| ||||| || || ||| || Sbjct 9620 GCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTTCTCGAGTAC 9561 Query 17365 GATGCCGTCGCTCGCGGCGAAAAACGCCAATA--TATGCTTAATGAAATATTTTTCGTCC 17422 || ||||| ||||| || || || || || | || | | ||||||| ||| | Sbjct 9560 AATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGAT--ATGAAATGACGTTCCCCA 9503 Query 17423 GGTGTAAG-AACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCA 17481 | || || | ||| | | | ||||||||| | |||||| ||||| ||||| Sbjct 9502 ACCTTGAGCGACTC-CCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCACAGTCCA 9444 Query 17482 AAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||| ||| || ||||| ||||| | || ||| | ||| | |||| ||||||||| Sbjct 9443 AAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGGGGAA 9387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517144107531480