Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1181 264 1e-65 >seq1181 Length=30581 Score = 264 bits (292), Expect = 1e-65 Identities = 604/911 (66%), Gaps = 46/911 (5%) Strand=Plus/Minus Query 15913 TTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTC 15972 ||| || |||| ||| || || || || ||||| || ||||| || | ||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 15973 CATAAAATCAAAGGGATT----------------------------AGTAGCTGAAAATA 16004 |||||||||||| ||||| | ||| |||||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 16005 T------CTTAGAGTACCCCAGTTCCGTAACTAAT---CTATCTGCTACAAATTCTATAT 16055 | ||| || || ||||| ||||| | || ||||| | |||||| || | Sbjct 10164 TACAAACCTTTTCATAACCAAGTTC---AACTAGTAGCCTGTCTGCGATAAATTCAATGT 10108 Query 16056 ATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAA 16115 | |||||||| | | |||||| ||||| || | | || || ||||||| || ||||| Sbjct 10107 ACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAA 10048 Query 16116 ATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTG 16175 | | |||||||| | |||||| ||| | || || | ||| | || || Sbjct 10047 ACTCCTGTTCTATTAGAACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCT 9988 Query 16176 TATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGC 16235 | | | | | |||||||| | |||||| ||||| || |||||||||||||||||||| | Sbjct 9987 TTTTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTAC 9928 Query 16236 TGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATA 16295 |||| | ||| ||| ||||| | || ||||| ||||||||||| | |||||||| Sbjct 9927 TGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATA 9868 Query 16296 TCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTT 16355 | || || || || ||||| || | ||| || || | ||||||||| ||||| |||| Sbjct 9867 TAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTT 9808 Query 16356 CCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTA 16415 | || | |||| | || | |||||| | | |||| | || |||| | | Sbjct 9807 CTGCAAAAGTAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGCAA 9748 Query 16416 TACAATCCATCGTTTC-TATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTA 16472 |||| | ||| | |||||| || | | || || |||| | || || | | Sbjct 9747 CACAAGTTA-AGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGA--GTCTTTGA 9691 Query 16473 TATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAA 16532 | || |||||||| | |||| ||||||||| ||||| || ||||| || |||||||| | Sbjct 9690 TGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCA 9631 Query 16533 ATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGT 16592 ||||| ||||| ||| |||| | || || |||||| | || ||||| |||| Sbjct 9630 TCCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGT 9571 Query 16593 TCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATT 16652 |||| || || |||||||| || ||||| || || || | || ||||||| Sbjct 9570 TCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAATGAC 9511 Query 16653 TTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTG 16712 ||| || | || | ||||| | | | ||||||||| | |||||| ||||| Sbjct 9510 GTTCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTCTTCCA 9451 Query 16713 GCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGG 16772 |||||||| ||| || ||||| ||||| | | ||| | ||| | |||| ||||| Sbjct 9450 CAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAATGCCAGACATCGTGATATTCTATGG 9391 Query 16773 GAAATACGACG 16783 | || | |||| Sbjct 9390 GGAAAAGGACG 9380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511017663886520