Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1181 224 1e-53 seq2578 107 2e-18 >seq1181 Length=30581 Score = 224 bits (248), Expect = 1e-53 Identities = 506/750 (67%), Gaps = 13/750 (2%) Strand=Plus/Minus Query 23967 CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 24026 || ||||||| ||| || || || ||||| || ||||||||||| || | | Sbjct 10129 CTGTCTGCGATAAATTCAATGTACTGACACATCAGTTTGCAATTCATTCCAATTAAGCTG 10070 Query 24027 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAAT-AGAGACCGCGTCTGTTATAATAGA 24085 ||||| ||||| | | | ||| || ||||| || ||| ||||| ||| |||| || || Sbjct 10069 ACTGGTAGAGCTTCTGATAAAAACTCCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGA 10011 Query 24086 TCTTACT-GTTTCTTCACTCGGTGGATACAATAA-ATGTTTAAACATCAAACATGCGAAA 24143 || ||| ||| | | | |||| ||||||||| | | ||| |||||| Sbjct 10010 CTCAACACGTTCCTTGGAAGGCTTTTTG--ATAATATGTTTAAATAATAGACAGGCGAAA 9953 Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 24203 || || ||||| || ||||||||||| |||||||| ||| ||| | ||||| ||||| Sbjct 9952 TCACAATGTAGTCCTTCGTCTCTACTGATTAATTCATTGCTAAAAGACAGTCCAGGCATA 9893 Query 24204 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 24263 || || || || |||||||| ||||| | || || |||||||| || | ||||| Sbjct 9892 AGACCTCGTTTCTTAAGCCAGAATATAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCC 9833 Query 24264 ACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTT 24320 ||||| ||||| ||||| | | |||| || || | || || | ||||| | | Sbjct 9832 ACTGCTGCAAAAGCAATTAAACGTTCTGCAAAAGTAGATTTGGAATCTCCAATCCAATCT 9773 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA--TTGTCTCTATAGCATTAAAGAGAT 24378 ||||| | ||||| ||| ||||||| | ||| || ||| || || |||||| Sbjct 9772 AATGCCCACTGAGCCTTTTTTGCAACACAAGTTAAGTTG-CT-TATGGCGTTGAAGAGAA 9715 Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438 ||| |||| || ||||| | ||||||||||| || | | |||||||| || | Sbjct 9714 AGTCCCTTTCTTTGGAGTCTTTGATGTATGTATCAATTAATAAAGAGTACATTTCAGAGT 9655 Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498 |||| || || || || || || | || || || || | | |||| | ||||| |||| Sbjct 9654 GAATATTCTCGATAGCTATCTGCATCCCATAAAAGCAACGAACCTCTGGGATCTGGACTT 9595 Query 24499 CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 | | || |||||| | || || || ||||||||||| || ||||| || | Sbjct 9594 CCTGGCTGAAACGTTCTAGGAGGTTCTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAG 9535 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 24618 | || || | ||| |||| ||| | | || | ||||| ||| || Sbjct 9534 CTAACACGTAGGATATGAAATGACGTTCCCCAACCTTGAGCGACTCCCAATGTATGAGAT 9475 Query 24619 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 24678 |||| || | |||||| |||||||| |||||||| || || | ||||| ||||| | || Sbjct 9474 CTTTGGACAAATCCACCTCTTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATAAAAAT 9415 Query 24679 TCCAGATGTCATGATATTGAATTGGAAAAA 24708 ||||| || ||||||| || || |||| Sbjct 9414 GCCAGACATCGTGATATTCTATGGGGAAAA 9385 >seq2578 Length=22660 Score = 107 bits (118), Expect = 2e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || ||||| || ||||||| || | ||| ||| ||| | |||||| || ||||| Sbjct 11273 CCAATACCCCCGGCATTTTTAGATATAATTGCACATTCTTTCAGCGTATCGTAAATGCCT 11214 Query 54368 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA--TTTGGTGACGACTAG 54425 ||||||||||| || |||| | | |||||||| || || | | |||| | || Sbjct 11213 TCTATACTATCGTCTTTCATAGTGATAAGAAAACAACTTGAAAGCTGTGGTTTGG--GAG 11156 Query 54426 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 54485 |||| || ||||| | || || ||||| || ||||||||||||||||| | || || | Sbjct 11155 TTCCAGCGTTAAAAAGTGTCGGTGAAGCATGTGTAAACCATTTTTCAGACATCAGGTTAT 11096 Query 54486 ACGTCTCGATAGCTG 54500 |||||| || || || Sbjct 11095 ACGTCTAGAAAGTTG 11081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593261013047280