Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1181 129 6e-25 >seq1181 Length=30581 Score = 129 bits (142), Expect = 6e-25 Identities = 389/598 (65%), Gaps = 2/598 (0%) Strand=Plus/Plus Query 116594 AACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTACAAA 116653 ||||| | ||| ||||| ||||||||||| |||| | || | |||| | || || Sbjct 9366 AACCCACACCGTTTCGTCCTTTTCCCCATAGAATATCACGATGTCTGGCATTTTTATAAG 9425 Query 116654 AAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGAC 116713 ||||| | || || || ||||| || || |||||||| ||||||| || | | Sbjct 9426 AAGGCTGTAGCTTCTTTTTGGACTGTGGAAGAGGTGGATTTGTCCAAAGATCTCATACAT 9485 Query 116714 TGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 |||||| ||| | || | || || |||||||| ||||| | || || || || Sbjct 9486 TGGGAGTCGC-TCAAGGTTGGGGAACGTCATTTCATATCCTACGTGTTAGCTTTCTTTGC 9544 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 || || ||||| || || |||||| || | || |||||| ||||| || ||| | Sbjct 9545 GGCGAGTGACGGAATTGTACTCGAGAACCTCCTAGAACGTTTCAGCCAGGAAGTCCAGAT 9604 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892 | |||| || ||||| || || | ||||| || || ||||| | ||||| ||||| Sbjct 9605 CCCAGAGGTTCGTTGCTTTTATGGGATGCAGATAGCTATCGAGAATATTCACTCTGAAAT 9664 Query 116893 GTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAA 116952 ||| || | || || || ||| | || | || | | | | | || || Sbjct 9665 GTACTCTTTATTAATTGATACATACATCAAAGACTCCAAAGAAAGGGACTTTCTCTTCAA 9724 Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 |||||| | | | || || | | ||||| ||||||| | ||||| | Sbjct 9725 CGCCATAAGCAACTTAACTTGTGTTGCAAAAAAGGCTCAGTGGGCATTAGATTGGATTGG 9784 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | | | | || | || || | | || || || || || || || ||||| Sbjct 9785 AGATTCCAAATCTACTTTTGCAGAACGTTTAATTGCTTTTGCAGCAGTGGAAGGTGTCTT 9844 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 ||||| || || ||||| || ||||| ||||| |||||||| || || ||||| || || Sbjct 9845 TTTTTCTGGTAGCTTCGCAGCTATATTCTGGCTTAAGAAACGAGGTCTTATGCCTGGACT 9904 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGT 117190 | |||| ||||| || | ||| || ||||| || || ||||| || || |||||| Sbjct 9905 GTCTTTTAGCAATGAATTAATCAGTAGAGACGAAGGACTACATTGTGATTTCGCCTGT 9962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514819512265360