Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq21369 134 2e-26 seq16658 87.8 3e-12 seq7541 87.8 3e-12 >seq21369 Length=4562 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| || || ||||||||||| |||| |||| | | Sbjct 728 ATGCAGATTTTTGTGAAGACACTTACGGGAAAAACTATAACCCTAGAAGTTGAGCCTGCT 787 Query 124599 GATACAATTTCTA-ATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| | |||| | ||||||||||||||||||||| || ||||| || || Sbjct 788 GATACAATAGAAGCAGTTAAGGC-GAAAATTCAAGATAAAGAAGGCATCCCACCAGACCA 846 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | || |||||||| || |||||| | || ||| | ||||| | || ||||| Sbjct 847 ACAACGTCTAATTTTTGCTGGCAAACAACTGGAAGATGGACGAACTCTTTCCGACTATAA 906 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || |||||||| | ||| | || | ||| | || |||||||| Sbjct 907 TATACAGAAGGAATCAACACTTCATCTTGTCCTCCGTCTTCGTGGTGGTAT 957 >seq16658 Length=6336 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 202759 AACATCAAATTTACGTCTACATCCTTCATAACTCATATATCTAATTTTACCAAATATTGG 202818 |||| |||||| ||| |||||||| ||| ||||||||| ||||||||||| || || Sbjct 4666 AACAGAAAATTTCCGTAAACATCCTTTATAGTTCATATATCGTATTTTACCAAAAATAGG 4725 Query 202819 TCTTTCTTTCCATGCTCTATCATGAATACCACAAATTGACCACATA 202864 || ||| ||| || |||||||| |||||| |||| ||||||| Sbjct 4726 TCGTTCAGGCCAGCCTTGATCATGAACACCACATATTGCCCACATA 4771 >seq7541 Length=12614 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 205392 ATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATG 205451 ||| ||||| |||| ||||| | |||| || ||| ||||||||| ||| | ||| Sbjct 9802 ATAAATATGCGCATCGCCAATTGTGTGAACGAACTCACCAGGTTTTAAACCAGTAATATG 9743 Query 205452 TGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||||||||| || |||||| |||||| |||| ||| || |||||||| | |||| Sbjct 9742 AGCAATCATATATGTTAATAAAGCATAACTTGCAATATTGAACGGTACACCAAGACCC 9685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754869945564800