Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq7011 91.5 2e-13 seq5597 89.7 6e-13 seq11917 82.4 9e-11 >seq7011 Length=13252 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| ||||| ||||||| Sbjct 76 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTAACCACTA 135 Query 60126 TACTACCGAGGATTGAATATAT 60147 ||||| |||||| | |||||| Sbjct 136 TACTATCGAGGA--GCATATAT 155 >seq5597 Length=15245 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| || || || ||||||||||||| | ||| ||||||| Sbjct 11801 CTCCTCGACCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGACACTTACCACTA 11860 Query 60126 TACTACCGAGGATTGAATA 60144 ||||| |||||| ||||| Sbjct 11861 TACTATCGAGGAGCGAATA 11879 >seq11917 Length=8841 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| ||||||||||||||| || || || |||||||||||| ||||||||||||| Sbjct 1414 CTCCTCGACAGGGAATCGAACCCGGGCCTTCCATGTGACAGGCGGAGATACTCACCACTA 1473 Query 60126 TAC 60128 ||| Sbjct 1474 TAC 1476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571374005349080