Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1181 269 2e-67 >seq1181 Length=30581 Score = 269 bits (298), Expect = 2e-67 Identities = 587/876 (67%), Gaps = 56/876 (6%) Strand=Plus/Minus Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 ||||||||||| ||||| ||| ||||| || ||||| |||||||| | ||| |||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 16006 CATAAAATCAAAAGGATTTTTTGAACAATAGT-------------------------ATT 16040 |||||||||||||||||| | ||| ||| ||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 16041 TA-------TCGCATC-CCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATACT 16091 || | ||| |||| | |||| | || || || || | |||||| || |||| Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 16092 GTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAt 16151 | ||| | | || |||||||| ||||| | || || | ||||||| |||||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 16152 ttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGG- 16210 | |||||| |||||| || | ||||| | || | || | || ||| || Sbjct 10044 CCTGTTCTATTAGAACCGCCTCTCTTATTAT-TGACTCAACACGTTCCTT---GGAAGGC 9989 Query 16211 --TTTAATAAG-TGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTA 16267 ||| |||| |||||||| | || ||| || ||||||||||| | ||||||||| ||| Sbjct 9988 TTTTTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTA 9929 Query 16268 CTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 || ||||| || || ||| | || || ||||| || |||||||| |||| ||| ||| Sbjct 9928 CTGATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAAT 9869 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 ||||| || || ||||||||| || | |||||| ||||| ||||| |||| || || Sbjct 9868 ATAGCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGT 9809 Query 16388 TCACCGTACGTTCTAtttttact-ttctatccattttttagcccaatttgctttttgttt 16446 || | | | | |||| | | | | ||||| | | ||||| | || |||| | Sbjct 9808 TCTGCAAAAG-TAGATTTGGAATCTCCAATCCAATCTAATGCCCACTGAGCCTTTTTTGC 9750 Query 16447 AACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAAT 16506 |||||| | | ||| ||| || || || | | | | |||||||| ||| || Sbjct 9749 AACACAAGTTAAGTTGCTTATGGCGTTGAAGAGAAAGTCCCTTTCTTTGGAGTCTTTGAT 9690 Query 16507 ATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAA 16566 || ||||| |||| |||| |||||||| || ||||||||||| || |||||||| | Sbjct 9689 GTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGCAT 9630 Query 16567 ACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTT 16626 ||||||||||| | | | || | || || ||||| | || | |||| | ||| Sbjct 9629 CCCATAAAAGCAACGAACCTCTGGGATCTGGACTTCCTGGCTGAAACGTTCTAGGAGGTT 9570 Query 16627 TTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAttttt 16686 ||| || ||||| || || || ||||| || || | | || || ||| | Sbjct 9569 CTCGAGTACAATTCCGTCACTCGCCGCAAAGAAAGCTAACACGTAGGATATGAAA----T 9514 Query 16687 ttCGTTATCTGAAAGTTTTAACCAGTCAGAA------AAATCTTTTGATAAATCGACCTC 16740 ||| || || || | | | || || | |||||| || ||||| ||||| Sbjct 9513 GACGT--TCCCCAACCTTGAGCGACTCCCAATGTATGAGATCTTTGGACAAATCCACCTC 9456 Query 16741 TTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATA 16776 ||| ||||||||||||||||| |||||||| ||||| Sbjct 9455 TTCCACAGTCCAAAAAGAAGCTACAGCCTTCTTATA 9420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462153200534600