Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schistosoma_20mattheei_20[genbank_20GCA_5F000951455.1_202014-09-25] 62,061 sequences; 340,818,150 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1181 215 5e-51 >seq1181 Length=30581 Score = 215 bits (238), Expect = 5e-51 Identities = 462/685 (67%), Gaps = 48/685 (7%) Strand=Plus/Minus Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||||||||| ||||| || ||||| ||||| || || ||||| | |||||||||||| Sbjct 10284 TTGATATTCACCAACTCGCTTCTCAAAAAAGTTTGTCTTTCCTTCGATTGATATATTTTC 10225 Query 13975 CATAAAATCAAATGGATT-------TGTTG-ACATAAAC--------------------- 14005 |||||||||||| ||||| || | || ||||| Sbjct 10224 CATAAAATCAAAAGGATTGTCAGAATGATACACCTAAACGAAAACGATTAGAAGAAAATT 10165 Query 14006 -----ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATT 14060 || || ||| |||| ||||| | ||||| || || || || || ||||| || | Sbjct 10164 TACAAACCTTTTCATAACCAAGTTCAACTAGTAGCCTGTCTGCGATAAATTCAATGTACT 10105 Query 14061 GAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATT 14120 || |||| | | |||||||| || |||| | || || | | | |||||| | Sbjct 10104 GACACATCAGTTTGCAATTCATTCCAATTAAGCTGACTGGTAGAGCTTCTGATAAAAACT 10045 Query 14121 CTTTTTCTAT-AGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGA 14179 | | |||||| ||| || ||||| |||| || | || | ||| || ||||| Sbjct 10044 CCTGTTCTATTAGA-ACCGCCTCTCTTATTATTGACTCAACACGTTCCTTGGAAGGCTTT 9986 Query 14180 TATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTA 14239 | | | ||||||||| | || ||| || ||||||||||| || || || |||||||| Sbjct 9985 TTGATAATATGTTTAAATAATAGACAGGCGAAATCACAATGTAGTCCTTCGTCTCTACTG 9926 Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299 || | ||| || ||| | | ||| ||||| | |||||||| || | ||| ||||| Sbjct 9925 ATTAATTCATTGCTAAAAGACAGTCCAGGCATAAGACCTCGTTTCTTAAGCCAGAATATA 9866 Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359 || ||||| || ||||| || | || || ||||| ||||| || ||||| |||||| Sbjct 9865 GCTGCGAAGCTACCAGAAAAAAAGACACCTTCCACTGCTGCAAAAGCAATTAAACGTTCT 9806 Query 14360 CCAAACGATGCTTTTTTGT-TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAAT 14418 |||| | | ||| | || | ||||| | | ||||| | || |||||| || Sbjct 9805 GCAAAAGTAGATTTGGAATCTCCA-ATCCAATCTAATGCCCACTGAGCCTTTTTTGCAAC 9747 Query 14419 AAAA--TCCATTGTTTCAATAGCATTAAATA-AATGTTCCTTCTCTTT--AGTACTTGAA 14473 | || | ||| || || || || || | || || |||| ||||| ||| ||| Sbjct 9746 ACAAGTTAAGTTGCTT--ATGGCGTTGAAGAGAAAGTCCCTT-TCTTTGGAGTCTTTG-- 9692 Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 |||||||||||||| | ||| |||||||||||||| || || || ||||||||||| Sbjct 9691 ATGTATGTATCAATTAATAAAGAGTACATTTCAGAGTGAATATTCTCGATAGCTATCTGC 9632 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 | |||||||| || | | | |||| Sbjct 9631 ATCCCATAAAAGCAACGAACCTCTG 9607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481971414371480